Gene detail information of Glyur000084s00009504.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G08170.12.00E-162porphyromonas-type peptidyl-arginine deiminase family protein
NRAES91372.20porphyromonas-type peptidyl-arginine deiminase [Medicago truncatula]
COGYP_001412422.12.00E-138agmatine deiminase [Parvibaculum lavamentivorans DS-1]
Swissprottr|Q8GWW7|AGUA_ARATH0Agmatine deiminase
trEMBLtr|G7JT50|G7JT50_MEDTR0Porphyromonas-type peptidyl-arginine deiminase {ECO:0000313|EMBL:AES91372.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00084223377228438-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10536aguA EC:3.5.3.12 Arginine and proline metabolism map00330


Gene Ontology

biological_process

GO:0009446  putrescine biosynthetic process


molecular_function

GO:0004668  protein-arginine deiminase activity

GO:0047632  agmatine deiminase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000084s00009504.1PF04371.10PAD_porph744423.10E-132


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.441
SRR1783600control6.344
SRR1783602moderate drought stress7.172
SRR1811619moderate drought stress7.168

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.872
DRR006520Root Summer glycyrrhizin high producing strain11.660
DRR006521Root Winter glycyrrhizin high producing strain12.834
DRR006522Root Winter glycyrrhizin high producing strain12.684
DRR006523Root Summer glycyrrhizin low producing strain14.715
DRR006524Root Summer glycyrrhizin low producing strain14.749
DRR006525Leaf Summer glycyrrhizin high producing strain13.694
DRR006526Leaf Summer glycyrrhizin high producing strain13.298

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.861
SRR2868004Drought Stress(Tissue:root)14.883
SRR2967015Control (Tissue:root)17.711

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.131
SRR9715740Leave435.240
SRR9715741Leave36.611
SRR9715739Root21.536
SRR9715742Root12.733
SRR9715743Root14.245

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.020
SRR8749028MeJA induced 9h7.420
SRR8749029MeJA induced 9h11.524
SRR8749030Uninduced2.738
SRR8749031Uninduced1.192
SRR8749032Uninduced1.991

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.887
SRR8400027Control-Root19.453

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved