Gene detail information of Glyur000084s00009508.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G72550.10tRNA synthetase beta subunit family protein
NRXP_003609165.10hypothetical protein MTR_4g112680 [Medicago truncatula]
COGNP_578719.11.00E-82phenylalanyl-tRNA synthetase subunit beta [Pyrococcus furiosus DSM 3638]
Swissprottr|Q9SGE9|SYFB_ARATH0Probable phenylalanine--tRNA ligase beta subunit
trEMBLtr|G7JT40|G7JT40_MEDTR0Phenylalanyl-tRNA synthetase beta chain {ECO:0000313|EMBL:AES91362.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00084244226251511+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01890FARSB, pheT EC:6.1.1.20 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006432  phenylalanyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0000287  magnesium ion binding

GO:0003723  RNA binding

GO:0004826  phenylalanine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000084s00009508.1PF03483.12B3_41192801.20E-24
Glyur000084s00009508.1PF03484.10B53063781.10E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control30.609
SRR1783600control30.905
SRR1783602moderate drought stress28.667
SRR1811619moderate drought stress28.538

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.158
DRR006520Root Summer glycyrrhizin high producing strain33.851
DRR006521Root Winter glycyrrhizin high producing strain22.722
DRR006522Root Winter glycyrrhizin high producing strain22.144
DRR006523Root Summer glycyrrhizin low producing strain32.161
DRR006524Root Summer glycyrrhizin low producing strain32.151
DRR006525Leaf Summer glycyrrhizin high producing strain22.144
DRR006526Leaf Summer glycyrrhizin high producing strain22.104

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)60.178
SRR2868004Drought Stress(Tissue:root)46.714
SRR2967015Control (Tissue:root)44.280

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave29.622
SRR9715740Leave29.304
SRR9715741Leave29.846
SRR9715739Root11.890
SRR9715742Root28.866
SRR9715743Root27.694

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h51.645
SRR8749028MeJA induced 9h65.009
SRR8749029MeJA induced 9h35.703
SRR8749030Uninduced16.034
SRR8749031Uninduced10.331
SRR8749032Uninduced10.930

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root55.763
SRR8400027Control-Root47.503

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved