Gene detail information of Glyur000085s00008864.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G36700.46.00E-1472-phosphoglycolate phosphatase 1
NRACJ84739.10unknown [Medicago truncatula]
COGNP_578161.13.00E-47sugar-catabolism phosphotransferase [Pyrococcus furiosus DSM 3638]
Swissprottr|P0DKC4|PGP1B_ARATH0Phosphoglycolate phosphatase 1B, chloroplastic (Precursor)
trEMBLtr|B7FJ10|B7FJ10_MEDTR0Putative uncharacterized protein {ECO:0000313|EMBL:ACJ84739.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00085160244165729-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K19269PGP, PGLP EC:3.1.3.18 3.1.3.48 Carbon metabolism map01200
Glyoxylate and dicarboxylate metabolismmap00630


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0016791  phosphatase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000085s00008864.1PF13344.1Hydrolase_6961972.60E-34
Glyur000085s00008864.1PF13242.1Hydrolase_like2933674.80E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.418
SRR1783600control15.571
SRR1783602moderate drought stress8.988
SRR1811619moderate drought stress8.976

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.852
DRR006520Root Summer glycyrrhizin high producing strain16.732
DRR006521Root Winter glycyrrhizin high producing strain2.635
DRR006522Root Winter glycyrrhizin high producing strain2.640
DRR006523Root Summer glycyrrhizin low producing strain6.683
DRR006524Root Summer glycyrrhizin low producing strain6.989
DRR006525Leaf Summer glycyrrhizin high producing strain311.625
DRR006526Leaf Summer glycyrrhizin high producing strain310.452

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)67.025
SRR2868004Drought Stress(Tissue:root)41.827
SRR2967015Control (Tissue:root)40.417

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave238.163
SRR9715740Leave230.881
SRR9715741Leave236.240
SRR9715739Root21.690
SRR9715742Root9.931
SRR9715743Root13.078

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h39.032
SRR8749028MeJA induced 9h20.941
SRR8749029MeJA induced 9h20.735
SRR8749030Uninduced10.191
SRR8749031Uninduced3.068
SRR8749032Uninduced7.226

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root55.295
SRR8400027Control-Root43.696

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved