Gene detail information of Glyur000085s00008869.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17430.1 | 3.00E-79 | Integrase-type DNA-binding superfamily protein |
| NR | XP_007139701.1 | 0 | hypothetical protein PHAVU_008G052000g [Phaseolus vulgaris] |
| Swissprot | tr|Q8LSN2|BBM2_BRANA | 1.00E-99 | AP2-like ethylene-responsive transcription factor BBM2 |
| trEMBL | tr|V7B2C9|V7B2C9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW11695.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00085 | 186790 | 191550 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000085s00008869.1 | PF00847.15 | AP2 | 357 | 408 | 3.50E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.034 |
| SRR1783600 | control | 0.038 |
| SRR1783602 | moderate drought stress | 0.061 |
| SRR1811619 | moderate drought stress | 0.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.050 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.049 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.051 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.050 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.103 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.080 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.956 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.327 |
| SRR2967015 | Control (Tissue:root) | 5.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.083 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.087 |
| SRR9715742 | Root | 0.095 |
| SRR9715743 | Root | 0.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 87.517 |
| SRR8749028 | MeJA induced 9h | 33.808 |
| SRR8749029 | MeJA induced 9h | 25.552 |
| SRR8749030 | Uninduced | 7.361 |
| SRR8749031 | Uninduced | 2.319 |
| SRR8749032 | Uninduced | 2.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.458 |
| SRR8400027 | Control-Root | 0.287 |