Gene detail information of Glyur000085s00008887.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G47390.20cytidine/deoxycytidylate deaminase family protein
NRXP_004492842.10PREDICTED: riboflavin biosynthesis protein RibD-like [Cicer arietinum]
COGYP_007081858.14.00E-103diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pleurocapsa sp. PCC 7327]
Swissprottr|Q9STY4|RIBR_ARATH05-amino-6-(5-phosphoribosylamino)uracil reductase (Precursor)
trEMBLtr|A0A072U1X8|A0A072U1X8_MEDTR0Riboflavin biosynthesis protein RibD {ECO:0000313|EMBL:KEH23396.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00085318849323139-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11752ribD EC:3.5.4.26 1.1.1.193 Riboflavin metabolism map00740
Quorum sensingmap02024


Gene Ontology

biological_process

GO:0009231  riboflavin biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0008270  zinc ion binding

GO:0008703  5-amino-6-(5-phosphoribosylamino)uracil reductase activity

GO:0008835  diaminohydroxyphosphoribosylaminopyrimidine deaminase activity

GO:0016787  hydrolase activity

GO:0050661  NADP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000085s00008887.1PF00383.17dCMP_cyt_deam_1311264.10E-05
Glyur000085s00008887.1PF01872.12RibD_C1863881.10E-40
Glyur000085s00008887.1PF08719.6DUF17684245782.80E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.026
SRR1783600control4.999
SRR1783602moderate drought stress3.887
SRR1811619moderate drought stress3.803

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.144
DRR006520Root Summer glycyrrhizin high producing strain3.967
DRR006521Root Winter glycyrrhizin high producing strain1.575
DRR006522Root Winter glycyrrhizin high producing strain1.286
DRR006523Root Summer glycyrrhizin low producing strain2.887
DRR006524Root Summer glycyrrhizin low producing strain2.718
DRR006525Leaf Summer glycyrrhizin high producing strain15.234
DRR006526Leaf Summer glycyrrhizin high producing strain15.580

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.868
SRR2868004Drought Stress(Tissue:root)10.652
SRR2967015Control (Tissue:root)10.694

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.634
SRR9715740Leave20.120
SRR9715741Leave13.505
SRR9715739Root4.374
SRR9715742Root5.459
SRR9715743Root4.724

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.402
SRR8749028MeJA induced 9h3.039
SRR8749029MeJA induced 9h2.504
SRR8749030Uninduced1.811
SRR8749031Uninduced1.143
SRR8749032Uninduced0.950

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.632
SRR8400027Control-Root7.744

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved