Gene detail information of Glyur000085s00008890.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G16440.17.00E-54isopentenyl diphosphate isomerase 1
NRXP_004492840.18.89E-88PREDICTED: isopentenyl-diphosphate Delta-isomerase I-like [Cicer arietinum]
COGYP_007243351.11.00E-18isopentenyl-diphosphate delta-isomerase [Thioflavicoccus mobilis 8321]
Swissprottr|Q39472|IDI1_CLABR4.00E-68Isopentenyl-diphosphate Delta-isomerase I
trEMBLtr|K7MUH0|K7MUH0_SOYBN4.00E-79Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G47770.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00085345016350315+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01823idi, IDI EC:5.3.3.2 Terpenoid backbone biosynthesis map00900


Gene Ontology

biological_process

GO:0008299  isoprenoid biosynthetic process


molecular_function

GO:0004452  isopentenyl-diphosphate delta-isomerase activity

GO:0016787  hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000085s00008890.1PF00293.23NUDIX1161601.20E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control135.652
SRR1783600control136.183
SRR1783602moderate drought stress101.798
SRR1811619moderate drought stress101.587

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain139.848
DRR006520Root Summer glycyrrhizin high producing strain138.888
DRR006521Root Winter glycyrrhizin high producing strain70.530
DRR006522Root Winter glycyrrhizin high producing strain68.155
DRR006523Root Summer glycyrrhizin low producing strain82.998
DRR006524Root Summer glycyrrhizin low producing strain82.650
DRR006525Leaf Summer glycyrrhizin high producing strain309.960
DRR006526Leaf Summer glycyrrhizin high producing strain308.037

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)607.225
SRR2868004Drought Stress(Tissue:root)496.782
SRR2967015Control (Tissue:root)393.787

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave627.573
SRR9715740Leave960.403
SRR9715741Leave595.725
SRR9715739Root237.419
SRR9715742Root277.154
SRR9715743Root279.829

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h120.701
SRR8749028MeJA induced 9h82.980
SRR8749029MeJA induced 9h114.388
SRR8749030Uninduced219.875
SRR8749031Uninduced201.591
SRR8749032Uninduced212.037

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root486.141
SRR8400027Control-Root358.555

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved