Gene detail information of Glyur000086s00011495.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G18140.16.00E-163Transducin/WD40 repeat-like superfamily protein
NRKHN28630.10Protein LST8 like [Glycine soja]
COGNP_487506.12.00E-39hypothetical protein alr3466 [Nostoc sp. PCC 7120]
Swissprottr|Q3Y8L7|DAW1_CHLRE1.00E-18Dynein assembly factor with WDR repeat domains 1
trEMBLtr|I1MEV0|I1MEV0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G09170.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000864003945389+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000086s00011495.1PF00400.27WD407210.021
Glyur000086s00011495.1PF00400.27WD40691069.10E-09
Glyur000086s00011495.1PF00400.27WD401191470.0016
Glyur000086s00011495.1PF00400.27WD402022431.60E-08
Glyur000086s00011495.1PF00400.27WD402502854.40E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control47.596
SRR1783600control47.844
SRR1783602moderate drought stress54.985
SRR1811619moderate drought stress54.694

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.483
DRR006520Root Summer glycyrrhizin high producing strain36.279
DRR006521Root Winter glycyrrhizin high producing strain30.760
DRR006522Root Winter glycyrrhizin high producing strain29.815
DRR006523Root Summer glycyrrhizin low producing strain30.022
DRR006524Root Summer glycyrrhizin low producing strain29.957
DRR006525Leaf Summer glycyrrhizin high producing strain22.928
DRR006526Leaf Summer glycyrrhizin high producing strain22.797

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.886
SRR2868004Drought Stress(Tissue:root)45.346
SRR2967015Control (Tissue:root)42.843

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave25.692
SRR9715740Leave33.412
SRR9715741Leave34.823
SRR9715739Root48.643
SRR9715742Root30.250
SRR9715743Root33.794

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h41.139
SRR8749028MeJA induced 9h38.307
SRR8749029MeJA induced 9h36.530
SRR8749030Uninduced28.447
SRR8749031Uninduced20.227
SRR8749032Uninduced42.219

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.960
SRR8400027Control-Root48.475

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved