Gene detail

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Gene detail information of Glyur000086s00011502.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18780.1	0	cellulose synthase family protein
NR	KEH36631.1	0	cellulose synthase-like protein [Medicago truncatula]
COG	NP_487797.1	1.00E-18	cellulose synthase catalytic subunit [Nostoc sp. PCC 7120]
Swissprot	tr\|Q8LPK5\|CESA8_ARATH	0	Cellulose synthase A catalytic subunit 8 [UDP-forming]
trEMBL	tr\|A0A072V4N8\|A0A072V4N8_MEDTR	0	Cellulose synthase {ECO:0000256\|RuleBase:RU361116}

Sequence

Transcript Sequence

>Glyur000086s00011502.1
TGCCTTTCTAATAGTGACTTTGTGTGCGAGCTAAACAATGAATGACACCAACCCCTCAACCTCTGAAAATGAACCCACCACACCAATACAAATTTGCTTCCCAATTCCAACGTCCTCACTTAAGGTTTGCTTCAATGAGTTTATGCTCTTTCATATAAACCCATCAGAGCATAGATTGATCAGAAGCAAAGAAGGGTCAGAGAGGTTGTTTATACTGACTTTTTGGTCCTTGGACATAAGGTGGACCAAAGAACAAAAATGATGGAATCTGGGGTTCAGTTCTGCAACTCTTGTGGTGAACAAATGGGAGTTGATGCCAATGGGGAGGTGTTTGTGGCTTGTCATGAGTGCTATTTCCCAATTTGCAAGGCTTGTGTTGATTATGAAATCAATGAGGGCCGTAGGGTCTGCTTGAGATGTGCCACTCCCTATGCTGCTGCTGATAGAACAAGAGGTAATGATGACACCAAAGTTCCCGGAAATCAATCCAGAATGGCTGCCCAGATCAGTGTTTCTGAGGATGTTGGACTCCATGCTAGGCATGTCAGTACTGTGTCCACAGTGGATAGCGAATATAATGATGAATCTGGGAATCCTATCTGGAAAAATAGAGTGGAAAGCTGGAAAGAAAAGGATAAAAAGAACAAGAAGAAAAAGGCAGCACCTAAGGCTGAAAATGAGACACCAGTTCCACCAGAACAGCAGATGGAAGAAATGCAGTCCCCAGAGGCTGCTGCTGCTGAGCCACTCTCAGTCATTATTCCAATCTCAAAAACGAAACTCTCACCATACAGATTTGTGATAGTCATGCGTCTGATAATCTTGGGTCTCTTTTTCCATTATCGAGTTACACACCCTGTTGACAGTGCTTATGGTCTTTGGTTGACATCTATCATCTGNGAGATCTGGTTTGCATTTTCCTGGGTGTTAGANCAGTTCCCCAAATGGTCTCCCATCAATAGGGAAACCTTTATTGACAGGCTCTCTGCAAGGTATGAAAGAGAGGGTGAACCCTCTCAGCTTGCTGCTGTGGATTTCTTTGTCAGTACAGTTGATCCTTTGAAGGAACCGCCACTGATCACAGCTAATACAGTGCTTTCAATCCTTGCTGTGGACTATCCTGTGGATAAAGTATCCTGTTATCTGTCAGATGATGGTGCTGCAATGCTGACATTTGAATCCCTTGTGGAGACCGCTGACTTTGCAAGAAAGTGGGTTCCATTTTGCAAGAAGTTCTCAATTGAACCCCGGGCACCTGAGTTCTACTTCTCTCAGAAGATTGATTACCTGAAGGACAAAATACAACCTTCTTTTGTGAAGGAACGTAGAGCAATGAAGAGAGACTATGAAGAGTTTAAAGTACGAATTAATGCTTTGGTAGCAAAGGCTCAGAAAACACCAGATGAAGGGTGGACTATGCAAGATGGAACCTCTTGGCCAGGAAATAACCCACGCGATCATCCTGGCATGATTCAGGTTTTCCTTGGACACAGTGGTGCCCAAGACATAGAAGGAAATGAACTTCCCAGGTTGGTCTATGTTTCCAGAGAGAAAAGGCCTGGCTACCAACACCACAAAAAGGCTGGTGCTGAAAATGCACTGGTGAGGGTGTCTGCAATTCTTACAAATGCTCCCTACATTCTCAATCTTGACTGTGATCATTATGTTAACAATAGCAAGGCTGTTCGGGAAGCAATGTGTTTTCTGATGGATCCAGTAGTTGGTAGAGATGTGTGTTATGTGCAGTTCCCCCAGAGATTTGATGGTATTGATCGAAGTGATCGATATGCCAATCGCAATACGGTTTTCTTTGATGTTAACATGAAAGGACTCGATGGCATTCAAGGACCTGTATATGTGGGGACTGGATGTGTTTTCAATCGACAGGCACTTTATGGCTACAGCCCACCTTCTATGCCCAAGTTACCAAAGTCTTCATCATGCTGTTGCTGCTGCCCCTCAAAGAAGCCTGCCAAAGATGTCGCAGAGCTTTATAAAGATGCAAAGAGGGAAGAGCTTGATGCTGCCATTTTTAATCTCAGGGAGATTGAAAATTATGATGAGTATGAGAGGTCAATGCTGATTTCACAAATGAGCTTTGAAAAAACATTTGGTTTGTCAACTGTTTTCATTGAATCTACACTAATGGAGAATGGAGGAGTTCCTGACTCTGCGGATCCCTCAATGCTGATCAAGGAGGCCATCCATGTAATTAGCTGTGGCTACGAAGAGAANACAGAATGGGGAAAAGAGATTGGTTGGATCTATGGTTCAGTGACTGAGGATATCTTAACGGGGTTCAAGATGCAATGCCGAGGATGGAGGTCAATTTACTGCATGCCCTTAAGGCCTGCATTCAAAGGGTCAGCGCCAATCAACCTTTCTGACCGGTTGCACCAAGTTCTTCGATGGGCCCTTGGATCAGTTGAAATTTTTCTCAGTAGACACTGCCCCCTCTGGTATGGTTTTGCAGGAGGTCGCCTCAAATGGCTGCAAAGATTGGCTTACATAAACACCATTGTCTACCCATTTACATCCCTTCCTCTCGTTGCTTATTGTTCTCTGCCTGCAATTTGCCTACTCACAGGAAAATTCATCATACCAACGGGATTCCTGAAGATGTTGGCAGGTGTTGACACCAACTTCACTGTCACTGCCAAAGCTGCTGATGATGCAGAGTTCGGTGAACTGTACATGATCAAGTGGACTACCCTCTTGATTCCTCCAACNACCCTTATCATTGTTAACATGGTTGGTGTGGTTGCTGGATTCTCTGATGCACTTAATGGTGGATATGAGTCTTGGGGACCACTCTTTGGGAAGGTTTTCTTTGCCTTCTGGGTGATTTTCCATCTCTACCCATTCCTCAAGGGTCTCATGGGTCGCCAAAACCGTACTCCAACCATTGTTATTCTTTGGTCAGTGCTGCTGGCCTCTGTCTTCTCCCTTGTTTGGGTCAAGATTAACCCATTTATCAGCAGAGTTGATAGTGCAACCATCTCCCAGACTTGCATCTCTATAGATTGTTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00086	58961	65365	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030244 cellulose biosynthetic process

cellular_component GO:0016020 membrane molecular_function GO:0016760 cellulose synthase (UDP-forming) activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000086s00011502.1	PF14569.1	zf-UDP	6	66	1.20E-15
Glyur000086s00011502.1	PF03552.9	Cellulose_synt	258	783	5.60E-306
Glyur000086s00011502.1	PF03552.9	Cellulose_synt	784	914	1.30E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.902
SRR1783600	control	2.858
SRR1783602	moderate drought stress	1.992
SRR1811619	moderate drought stress	1.929

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.918
DRR006520	Root Summer glycyrrhizin high producing strain	12.424
DRR006521	Root Winter glycyrrhizin high producing strain	0.992
DRR006522	Root Winter glycyrrhizin high producing strain	1.028
DRR006523	Root Summer glycyrrhizin low producing strain	7.129
DRR006524	Root Summer glycyrrhizin low producing strain	7.010
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.732
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.660

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	20.590
SRR2868004	Drought Stress(Tissue:root)	11.852
SRR2967015	Control (Tissue:root)	10.441

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.622
SRR9715740	Leave	3.739
SRR9715741	Leave	1.790
SRR9715739	Root	0.818
SRR9715742	Root	9.359
SRR9715743	Root	7.650

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.140
SRR8749028	MeJA induced 9h	0.037
SRR8749029	MeJA induced 9h	0.096
SRR8749030	Uninduced	0.063
SRR8749031	Uninduced	0.358
SRR8749032	Uninduced	0.143

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	5.226
SRR8400027	Control-Root	7.565