Gene detail information of Glyur000086s00011505.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05830.1 | 7.00E-25 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | XP_006597483.1 | 6.03E-153 | PREDICTED: uncharacterized protein LOC100791720 [Glycine max] |
| trEMBL | tr|K7MAD0|K7MAD0_SOYBN | 2.00E-153 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G09110.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00086 | 76574 | 80035 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000086s00011505.1 | PF12906.2 | RINGv | 180 | 245 | 1.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.477 |
| SRR1783600 | control | 3.617 |
| SRR1783602 | moderate drought stress | 4.065 |
| SRR1811619 | moderate drought stress | 3.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.785 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.841 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.470 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.089 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.526 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.514 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.986 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.668 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.181 |
| SRR2967015 | Control (Tissue:root) | 9.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 16.375 |
| SRR9715740 | Leave | 14.968 |
| SRR9715741 | Leave | 20.023 |
| SRR9715739 | Root | 2.373 |
| SRR9715742 | Root | 6.769 |
| SRR9715743 | Root | 5.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.776 |
| SRR8749028 | MeJA induced 9h | 32.020 |
| SRR8749029 | MeJA induced 9h | 15.627 |
| SRR8749030 | Uninduced | 20.059 |
| SRR8749031 | Uninduced | 20.959 |
| SRR8749032 | Uninduced | 17.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.007 |
| SRR8400027 | Control-Root | 6.713 |