Gene detail information of Glyur000086s00011509.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29200.2 | 2.00E-178 | O-fucosyltransferase family protein |
| NR | XP_004485909.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 2.00E-57 | Uncharacterized protein At1g04910 |
| trEMBL | tr|A0A072V4M7|A0A072V4M7_MEDTR | 0 | GDP-fucose protein O-fucosyltransferase {ECO:0000313|EMBL:KEH36621.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00086 | 96787 | 101540 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000086s00011509.1 | PF10250.4 | O-FucT | 193 | 555 | 4.80E-85 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.119 |
| SRR1783600 | control | 1.169 |
| SRR1783602 | moderate drought stress | 0.864 |
| SRR1811619 | moderate drought stress | 0.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.005 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.007 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.266 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.224 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.780 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.123 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.133 |
| SRR2967015 | Control (Tissue:root) | 2.888 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.168 |
| SRR9715740 | Leave | 2.809 |
| SRR9715741 | Leave | 1.168 |
| SRR9715739 | Root | 0.423 |
| SRR9715742 | Root | 2.535 |
| SRR9715743 | Root | 1.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.076 |
| SRR8749028 | MeJA induced 9h | 0.791 |
| SRR8749029 | MeJA induced 9h | 1.047 |
| SRR8749030 | Uninduced | 0.383 |
| SRR8749031 | Uninduced | 0.077 |
| SRR8749032 | Uninduced | 0.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.264 |
| SRR8400027 | Control-Root | 1.827 |