Gene detail information of Glyur000086s00011516.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G22285.10Ubiquitin C-terminal hydrolases superfamily protein
NRXP_007144392.10hypothetical protein PHAVU_007G152400g [Phaseolus vulgaris]
Swissprottr|Q9SUX7|FB245_ARATH8.00E-12Putative F-box protein At4g22420
trEMBLtr|V7BEY8|V7BEY8_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW16387.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00086138876143882-


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0008270  zinc ion binding

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000086s00011516.1PF02148.14zf-UBP1331944.20E-14
Glyur000086s00011516.1PF00443.24UCH2345561.60E-40


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.635
SRR1783600control25.515
SRR1783602moderate drought stress25.653
SRR1811619moderate drought stress25.505

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.718
DRR006520Root Summer glycyrrhizin high producing strain24.886
DRR006521Root Winter glycyrrhizin high producing strain47.956
DRR006522Root Winter glycyrrhizin high producing strain46.505
DRR006523Root Summer glycyrrhizin low producing strain19.597
DRR006524Root Summer glycyrrhizin low producing strain20.031
DRR006525Leaf Summer glycyrrhizin high producing strain13.087
DRR006526Leaf Summer glycyrrhizin high producing strain13.098

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.630
SRR2868004Drought Stress(Tissue:root)23.339
SRR2967015Control (Tissue:root)26.828

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.319
SRR9715740Leave22.517
SRR9715741Leave18.237
SRR9715739Root2.585
SRR9715742Root12.024
SRR9715743Root10.511

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h36.063
SRR8749028MeJA induced 9h45.382
SRR8749029MeJA induced 9h32.124
SRR8749030Uninduced25.174
SRR8749031Uninduced14.989
SRR8749032Uninduced17.319

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.606
SRR8400027Control-Root27.171

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved