Gene detail

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Gene detail information of Glyur000086s00011523.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38300.1	2.00E-24	myb-like HTH transcriptional regulator family protein
NR	XP_006594551.1	6.50E-79	PREDICTED: uncharacterized protein LOC102669757 [Glycine max]
Swissprot	tr\|Q700D9\|MYBF_ARATH	7.00E-25	Putative Myb family transcription factor At1g14600
trEMBL	tr\|K7M1B4\|K7M1B4_SOYBN	2.00E-79	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G30154.1}

Sequence

Transcript Sequence

>Glyur000086s00011523.2
GTTGGAAGACAAAGACACATCATCATCATCTTAAATGAAGTGAAATTCAACACTACTGTAGTCTGTAGACGACAAAAGAAGAAGAAGTGAATTGTGTGACCTTGGAGGTGAATATCCGTGCAATTAAGTGCAACTACAAATTAAGTTAAAACAAACATGTCAGAAGGGCATCATGAGATTCACAACAACAACATTGAGAGGAGTGAGGAGGAGGAGCAGGTGGTTCTGGTTGAGGAAACANATTCATCAGGATCTAATTCTTCTCAGAAATGCTCTTCCTTTGACTTGAATAAAGATCTTAACAACTGTGATTGTGAAGTCACACCCGATGAGGAAGCAAATAAGGATGATGAGGAGGGAACTTCAGCAAATAGAAGCACTAGTAGTAGTAGTAGTACATATAATAATTCAAGAGAAGTATTAGGGAATGAGAGAAGAGGGAGTGGTGTAAGTGTTAGACAATATGTGAGATCCAAGATGCCTCGGCTTCGGTGGACTCCTGAGCTTCATCTTTCTTTTGTGCATGCTGTTGAGAGGCTTGGAGGTCAAGAGAGGGCAACGCCCAAGTTGGTGCTCCAGCTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGAGGAAGGATTTAGGGTTCTTGAGAGTTGACAATTCAGTTCATGATCGAATATTAATCTACTTTGCAGTACTAAGCAAAACACACAGGAACCAGCGTTGGCAACCTTTCAGAATACCGATAACTTCAAACCCGATTCAGCTGAAGGACACAACCGACAGAATTGCACGAATGAGACCAAGCCAAATTATTAATATTGAAGACAAAAGTTGGCCTCCATTAGAAATTGTGAACAATCATCATCAACCGAAATTCAAAAGGTTATTNTCGGTCAATGTTACGGCTAAAACTTGCTCACCACAGGCTGAACGGAACACAAGTGCTACGGAATATCTATCGAACTCCAATGATCGACCTTACAACAGTTCATCCAGTAGTTTAAAGCTAGAATTTGAGCCCCCATTTCGGATTAAGTTGAATCAAGAGAAAGACGAGCAAGGGTTATTGCCTGATTTGGAATTGGGTTTGAGTCACAGTACTTGCAGAGAGAAGCAGGAAATTAGCACTAAGCTATCACTTTCGTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00086	167599	171935	+

Gene family

Gene family	subfamily
Transcription Factors Family	G2-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000086s00011523.2	PF00249.26	Myb_DNA-binding	110	158	3.60E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.785
SRR1783600	control	0.883
SRR1783602	moderate drought stress	0.970
SRR1811619	moderate drought stress	0.970

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.448
DRR006520	Root Summer glycyrrhizin high producing strain	0.448
DRR006521	Root Winter glycyrrhizin high producing strain	0.621
DRR006522	Root Winter glycyrrhizin high producing strain	0.632
DRR006523	Root Summer glycyrrhizin low producing strain	0.383
DRR006524	Root Summer glycyrrhizin low producing strain	0.491
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.310
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.620

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.606
SRR2868004	Drought Stress(Tissue:root)	5.791
SRR2967015	Control (Tissue:root)	4.504

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.556
SRR9715740	Leave	0.465
SRR9715741	Leave	0.377
SRR9715739	Root	0.051
SRR9715742	Root	0.172
SRR9715743	Root	0.075

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.344
SRR8749028	MeJA induced 9h	30.518
SRR8749029	MeJA induced 9h	23.349
SRR8749030	Uninduced	18.891
SRR8749031	Uninduced	33.098
SRR8749032	Uninduced	11.773

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.402
SRR8400027	Control-Root	2.531