Gene detail

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Gene detail information of Glyur000086s00011532.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G58630.1	2.00E-29	sequence-specific DNA binding transcription factors
NR	KEH36594.1	2.68E-150	transcription factor [Medicago truncatula]
Swissprot	tr\|Q9LJG8\|ASIL2_ARATH	9.00E-43	Trihelix transcription factor ASIL2 {ECO:0000305}
trEMBL	tr\|A0A072V3I8\|A0A072V3I8_MEDTR	1.00E-150	Transcription factor {ECO:0000313\|EMBL:KEH36594.1}

Sequence

Transcript Sequence

>Glyur000086s00011532.1
ATTTTTTAATCTACAAATATTTCCTCTGACGTAAATAAATTAAGATAATTCCAATAATCTGTTTTTTTTTTAATTTGAATTTTTGGGCTTCCGATAGTAGTAGTTGTAGCGGTCAAGCCGAGCCGATCCGATGACGCGAGCCACTCACAAACTCTGGGGGTTCCCCCAACAACACGCGCCCTTCCCCGGCGACCGTACCGTATTATCCCATCCCACTCTTTCGCCTTTGTTTTGCGTCCGCCGTTTCCCTTTCTCTTTCTCTTTCATTCTCTCTCTCTTCATCCTTTTCTCTCTCTCTCTCTCATCATCCAACCCTAATTCCCCTTTTTCCGATGCCGGACTTCCACGAATCCCCCGCGCCGCCGTCGCGCCCCGTCCCCGTCCGTGAGGACTGCTGGTCCGAGGAAGCCTCATCAACCCTCGTTGATGCCTGGGGACGCCGTTACCTCGAGCTTAACCGTGGAAACCTTCGCCAGAAGGATTGGCAGGACGTCGCCGACGCCGTTAATGCTCTCCACGGCCACACTAAGAAGACCTACCGCACCGACGTTCAGTGTAAGAATCGCATCGACACCATCAAGAAGAAGTACAAGGTCGAGAAGGCTAGGGTTTCGTCTTCTAACGGTGCCGTTTCATCCTCTTGGCCCTTCTTCGAACGATTGGACGCTCTGATTGGCCCTAATTTCAATGCGAAGAAGTCTTCTTCCGCCTCGCCGTCGCCGCCCGTCGCTCTCCCCTTGTTGCCGCACCGTAAAACCCCCTCTTCCCCCGCGATTGCGGTGCCGCCGACGGCCGTGGCGCTTCCGCAGAAGAGGTCAGCGCCAACGGTGATGGATGACGGTTACTTTAGGAGGAATTATTCTGCGATGGCGGCCGCGGCTGCTGCTGCGGAAGCCGATGAGGACGAGGAGGAAGATGAGGATGAGGAGGAAGTGGAGGTGGAGGTGGAGGAGGAGGAGGAAGATGAAGGGAGGGGAAGCGAAGTTGAGGAAGGGGAGAAGGAGAGGGAAGGGTTGAAGAGGTTGGCGAAGGCGATAGAGAGGTTTGGGGAAGTGTATGAAAGAGTGGAGGCACAGAAAGTGAGGCAGATGGTGGATTTGGAGAAACAGAGGATGCAGTTTGCTAAAGATCTTGAAGTGCAGAGGATGCAGATGTTTATGGACACACAAGTTCAGCTGGAGAGAATTAAGCGTGGGAAACGATCTGGGTCTAATGTGCAGAAGCATGTGTGGTACATGCGTTCTATATGTACAGCTAGCCAAGTGGGCGATGGTTCGATGAGGGCGCTCGGAACGCTGTCTTGCTTTGGTTATGATGTTGGCAAAGTACATATCATCAGCTGATACTGTCATGAGGAAATCTCCGATAGAAAATTTATCCAGGAGTAATTTTGGATTCTTTTAGCTAGATTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00086	227954	232178	+

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000086s00011532.1	PF13837.1	Myb_DNA-bind_4	19	113	7.10E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.164
SRR1783600	control	20.322
SRR1783602	moderate drought stress	27.938
SRR1811619	moderate drought stress	27.960

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.439
DRR006520	Root Summer glycyrrhizin high producing strain	32.496
DRR006521	Root Winter glycyrrhizin high producing strain	83.203
DRR006522	Root Winter glycyrrhizin high producing strain	81.101
DRR006523	Root Summer glycyrrhizin low producing strain	51.640
DRR006524	Root Summer glycyrrhizin low producing strain	50.891
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.381
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.401

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	37.761
SRR2868004	Drought Stress(Tissue:root)	38.878
SRR2967015	Control (Tissue:root)	41.144

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	31.000
SRR9715740	Leave	28.419
SRR9715741	Leave	39.315
SRR9715739	Root	34.519
SRR9715742	Root	30.627
SRR9715743	Root	31.260

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.093
SRR8749028	MeJA induced 9h	52.406
SRR8749029	MeJA induced 9h	62.169
SRR8749030	Uninduced	38.430
SRR8749031	Uninduced	43.162
SRR8749032	Uninduced	50.175

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	36.423
SRR8400027	Control-Root	37.179