Gene detail information of Glyur000087s00008538.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G50330.1 | 3.00E-35 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | ACU22958.1 | 1.96E-75 | unknown [Glycine max] |
| Swissprot | tr|Q9SND4|HEC2_ARATH | 5.00E-48 | Transcription factor HEC2 |
| trEMBL | tr|C6TJ68|C6TJ68_SOYBN | 7.00E-76 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU22958.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00087 | 59014 | 59874 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000087s00008538.1 | PF00010.21 | HLH | 181 | 221 | 6.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.339 |
| SRR1783600 | control | 0.338 |
| SRR1783602 | moderate drought stress | 0.343 |
| SRR1811619 | moderate drought stress | 0.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.155 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.191 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.470 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.390 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.663 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.609 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.324 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.803 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.963 |
| SRR2967015 | Control (Tissue:root) | 0.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.259 |
| SRR9715740 | Leave | 0.147 |
| SRR9715741 | Leave | 0.077 |
| SRR9715739 | Root | 0.173 |
| SRR9715742 | Root | 0.072 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.255 |
| SRR8400027 | Control-Root | 0.347 |