Gene detail

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Gene detail information of Glyur000087s00008541.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G67080.1	7.00E-96	mitogen-activated protein kinase kinase kinase 19
NR	XP_003517304.1	1.19E-170	PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Glycine max]
COG	YP_003270925.1	4.00E-23	serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	1.00E-43	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|I1J976\|I1J976_SOYBN	4.00E-171	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G39380.1}

Sequence

Transcript Sequence

>Glyur000087s00008541.1
TTCCCTTTTAAGTATTAAACAAGGGACACGACTCTTCTTGAATAGTTGTCTCATAGTATTTTCGATTCCTCTTATAAAACAGAGAACCACACCACACCACAGAGTAACACAAACTAAACCTTATTCTTCGTATTAGCCATGGACTGGGTTCGTGGACACTCGCTTGGAAGTGGAAGCTTTGCCACCGTCAATTTAGCCATACCCAAAAACGGTTGTTCCGTTCAGTTTCCTTCTCCCACCGCCGTCAAGTCCTCCGATGTTTACACCTCTCACATGCTCAAGAACGAGGAACATGTTCTCGATCGCTTAGGTTCATGCCCGCAAATCATCAAGTGTTTTGGCCACGATCGAACCTTTGAGGACAACGAAGAGTACTATAATCTGTTTCTCGAGTACGCCGCCGGTGGAACTCTCGCCGACCAGCTAAAGAATCACGGTGGGAGGTTGCCGGAAAAGATGGTTCGCCGGCACACGAGGTCCGTCGTGGAGGGTCTCAAACATGTTCACGCAAAGGGGTTTGTTCACTGCGACGTGAAGCTACAGAACATTCTCGTTTTCGACAATGGCGATGTTAAGATTGCGGATTTTGGTCTTGCGAAGGAAACAGGGGAGAAACAGGGGATAAAGTGGGAGTGCAGGGGAACTCCGATGTTTATGTCGCCGGAGTCTGTGAACGACAACGAGTACGAGTCGCCGGCGGATATATGGGCACTGGGATGCGCCGTCGTGGAGATGGTGACCGGAAAACCGGCGTGGGACATGAGAAAAGGGTCGAACATTTGGTCGTTGTTGATTCGAATTGGGGTAGGAGAAGAGTTGCCGAAGATTCCAGAAGAGCTTTCACAGGAAGGGAAGGACTTTCTCGAGAAGTGTTTCGTNAAGGATCCACGGAAGAGGTGGAGTGCAGAGATGCTTCNGAATCACCCCTTTCTCGCATACGANACCGTTTCATTCAAGCCAGTCAAGGAAAAACCTTTGGCGCCATCGCAATCCCCGAGAAGCCACTTCGATTTCCGTCACTTTGATTTGGCTTCTGCTTATTCTTCTTCTTCTTCTTCTTCCACTGTAACGGCTTTGCCTCCTACTTCGCCGATGGAGAGGCTCCGGCGGCTGGTCAATGATCAGGGACCAACGGATTGGTCAGAATCGGATGGCTGGATNTTTGTTAGGTCGAGTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00087	73236	74414	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.4.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000087s00008541.1	PF00069.20	Pkinase	6	265	3.40E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.062
SRR1783600	control	0.062
SRR1783602	moderate drought stress	0.097
SRR1811619	moderate drought stress	0.096

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.250
DRR006520	Root Summer glycyrrhizin high producing strain	6.882
DRR006521	Root Winter glycyrrhizin high producing strain	0.240
DRR006522	Root Winter glycyrrhizin high producing strain	0.277
DRR006523	Root Summer glycyrrhizin low producing strain	1.584
DRR006524	Root Summer glycyrrhizin low producing strain	1.498
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.079
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.175

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.971
SRR2868004	Drought Stress(Tissue:root)	19.578
SRR2967015	Control (Tissue:root)	16.399

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	154.956
SRR9715740	Leave	61.642
SRR9715741	Leave	202.816
SRR9715739	Root	7.609
SRR9715742	Root	47.996
SRR9715743	Root	40.547

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.938
SRR8749028	MeJA induced 9h	1.372
SRR8749029	MeJA induced 9h	1.891
SRR8749030	Uninduced	6.258
SRR8749031	Uninduced	7.609
SRR8749032	Uninduced	13.740

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	7.639
SRR8400027	Control-Root	13.122