Gene detail information of Glyur000087s00008545.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G67100.1 | 0 | DNA-directed DNA polymerases |
NR | XP_004511916.1 | 0 | PREDICTED: DNA polymerase alpha catalytic subunit-like [Cicer arietinum] |
COG | YP_006923059.1 | 2.00E-54 | DNA polymerase Pol2 [Methanolobus psychrophilus R15] |
Swissprot | tr|Q9FHA3|DPOLA_ARATH | 0 | DNA polymerase alpha catalytic subunit |
trEMBL | tr|G7K6L8|G7K6L8_MEDTR | 0 | DNA polymerase {ECO:0000256|RuleBase:RU000442} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00087 | 97541 | 109964 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K02320 | POLA1 | EC:2.7.7.7 | Purine metabolism | map00230 |
Pyrimidine metabolism | map00240 | |||
DNA replication | map03030 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000087s00008545.1 | PF12254.3 | DNA_pol_alpha_N | 25 | 93 | 2.00E-16 |
Glyur000087s00008545.1 | PF03104.14 | DNA_pol_B_exo1 | 421 | 769 | 4.60E-25 |
Glyur000087s00008545.1 | PF00136.16 | DNA_pol_B | 844 | 1253 | 8.90E-110 |
Glyur000087s00008545.1 | PF08996.5 | zf-DNA_Pol | 1301 | 1394 | 1.20E-06 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 6.039 |
SRR1783600 | control | 6.081 |
SRR1783602 | moderate drought stress | 3.283 |
SRR1811619 | moderate drought stress | 3.311 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 2.666 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 2.416 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 1.648 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 1.480 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 2.431 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 2.357 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.961 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.982 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 17.509 |
SRR2868004 | Drought Stress(Tissue:root) | 10.463 |
SRR2967015 | Control (Tissue:root) | 10.321 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 3.054 |
SRR9715740 | Leave | 2.721 |
SRR9715741 | Leave | 0.805 |
SRR9715739 | Root | 1.160 |
SRR9715742 | Root | 3.185 |
SRR9715743 | Root | 3.021 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 14.912 |
SRR8749028 | MeJA induced 9h | 12.260 |
SRR8749029 | MeJA induced 9h | 6.296 |
SRR8749030 | Uninduced | 2.064 |
SRR8749031 | Uninduced | 1.234 |
SRR8749032 | Uninduced | 1.262 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 18.353 |
SRR8400027 | Control-Root | 17.647 |