Gene detail information of Glyur000087s00008545.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G67100.10DNA-directed DNA polymerases
NRXP_004511916.10PREDICTED: DNA polymerase alpha catalytic subunit-like [Cicer arietinum]
COGYP_006923059.12.00E-54DNA polymerase Pol2 [Methanolobus psychrophilus R15]
Swissprottr|Q9FHA3|DPOLA_ARATH0DNA polymerase alpha catalytic subunit
trEMBLtr|G7K6L8|G7K6L8_MEDTR0DNA polymerase {ECO:0000256|RuleBase:RU000442}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0008797541109964+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02320POLA1 EC:2.7.7.7 Purine metabolism map00230
Pyrimidine metabolismmap00240
DNA replicationmap03030


Gene Ontology

biological_process

GO:0006260  DNA replication

GO:0006270  DNA replication initiation


molecular_function

GO:0000166  nucleotide binding

GO:0001882  nucleoside binding

GO:0003676  nucleic acid binding

GO:0003677  DNA binding

GO:0003887  DNA-directed DNA polymerase activity

GO:0008408  3'-5' exonuclease activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000087s00008545.1PF12254.3DNA_pol_alpha_N25932.00E-16
Glyur000087s00008545.1PF03104.14DNA_pol_B_exo14217694.60E-25
Glyur000087s00008545.1PF00136.16DNA_pol_B84412538.90E-110
Glyur000087s00008545.1PF08996.5zf-DNA_Pol130113941.20E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.039
SRR1783600control6.081
SRR1783602moderate drought stress3.283
SRR1811619moderate drought stress3.311

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.666
DRR006520Root Summer glycyrrhizin high producing strain2.416
DRR006521Root Winter glycyrrhizin high producing strain1.648
DRR006522Root Winter glycyrrhizin high producing strain1.480
DRR006523Root Summer glycyrrhizin low producing strain2.431
DRR006524Root Summer glycyrrhizin low producing strain2.357
DRR006525Leaf Summer glycyrrhizin high producing strain0.961
DRR006526Leaf Summer glycyrrhizin high producing strain0.982

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.509
SRR2868004Drought Stress(Tissue:root)10.463
SRR2967015Control (Tissue:root)10.321

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.054
SRR9715740Leave2.721
SRR9715741Leave0.805
SRR9715739Root1.160
SRR9715742Root3.185
SRR9715743Root3.021

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.912
SRR8749028MeJA induced 9h12.260
SRR8749029MeJA induced 9h6.296
SRR8749030Uninduced2.064
SRR8749031Uninduced1.234
SRR8749032Uninduced1.262

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.353
SRR8400027Control-Root17.647