Gene detail information of Glyur000087s00008547.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36930.1 | 1.00E-34 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_004511914.1 | 1.48E-139 | PREDICTED: transcription factor SPATULA-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FUA4|SPT_ARATH | 1.00E-47 | Transcription factor SPATULA |
| trEMBL | tr|I1LHD3|I1LHD3_SOYBN | 9.00E-131 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G05810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00087 | 118658 | 123890 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000087s00008547.2 | PF00010.21 | HLH | 156 | 198 | 2.60E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.937 |
| SRR1783600 | control | 15.996 |
| SRR1783602 | moderate drought stress | 24.114 |
| SRR1811619 | moderate drought stress | 24.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.493 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.699 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.116 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.937 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.722 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.846 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.687 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.085 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.131 |
| SRR2967015 | Control (Tissue:root) | 17.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.782 |
| SRR9715740 | Leave | 2.246 |
| SRR9715741 | Leave | 3.516 |
| SRR9715739 | Root | 3.305 |
| SRR9715742 | Root | 4.629 |
| SRR9715743 | Root | 3.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.286 |
| SRR8749028 | MeJA induced 9h | 17.248 |
| SRR8749029 | MeJA induced 9h | 12.073 |
| SRR8749030 | Uninduced | 8.931 |
| SRR8749031 | Uninduced | 4.464 |
| SRR8749032 | Uninduced | 7.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.104 |
| SRR8400027 | Control-Root | 15.880 |