Gene detail

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Gene detail information of Glyur000087s00008563.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57870.1	1.00E-24	sumo conjugation enzyme 1
NR	XP_006473287.1	1.57E-34	PREDICTED: SUMO-conjugating enzyme SCE1-like isoform X3 [Citrus sinensis]
Swissprot	tr\|Q42551\|SCE1_ARATH	2.00E-30	SUMO-conjugating enzyme SCE1
trEMBL	tr\|A0A067H903\|A0A067H903_CITSI	6.00E-35	Uncharacterized protein {ECO:0000313\|EMBL:KDO84096.1}

Sequence

Transcript Sequence

>Glyur000087s00008563.1
TGGTTTTAGTGATATTATGACGAAAACGATTAGATGAGGAGGGAGCGAAGGTTCTAGAAAAAAGCGGTGGAGAATAATAGGATAGAAGGAAGTCGTTGGGGCAGAGAGTNGAGGCGCAGATAGAGAGATCAGGGTGGGTAAGGGGTTTTATATCGATTTGAAAAGTGAGAATATAAAGAGAGGAGAGGGAATCAATCGGGTATTAGTAGTATTCAACTTCTGCTTCCTTCTACTGAATTATCAGGAGAGAAANAGAGAGAGAGAGAGATGTCTGGTATTGCTCGTGGACGCCTTGCGGAGGAGCGAAAGTCATGGCGTAAGAACCANCCCCATGGGTGGAGACCAGCTATAACAGTAAAGCAAATTCTTGTGGGCATCCAAGACCTGCTTGATCAGCCAAATCCTGCTGATCCTGCCCAAACAGAAGGCTATCATCTATTCATCCAGGATGCAGTTGAGTACAAAAGAAGGGTCCGACAGCAGGCAAAGCAATATCCACCTCTTGTCTAGTGCTATATCTGCTCACTTNAGAAACTATTCTAGTATGGTAGATGTTGTCCGCTATTTCTTGTTCTGTGCCAAACTTGTTCTGTGNTTGTTAGCTGCAATGATATGCAGACTCCTTGGTTTTAATTATTTCTACTTGCTCTCAGGTCTGGATAACGTGTTAATATATAACATTGTGAAAGTCAACCAATAATACTTGTTGGCGATACTTGCTGNTACATTTCTATATAAATGGATAATTTGCTGTTTTGTGACATTATGAGTTATGACTGCTGCTCTGGAACCTTTTTATATTTTGAATTCATTTTTTCCATTCTGGAGATCAAGCATACATATTGTTCAATTGGTCTGTCAATTGGTACCTTTGTCCATCCCGTGGGAGCATAAATTATCACTGAGAATTTTGCTTCCTAGATGATGGTGGAGCATTTTCCNCTAACAAAGTGATTCAATGGCATGTGCTGTGACTGCTGCTTGATTGACCTTGTTGATTCCTCCCAAAGAAAAAAGAAGCGGGGGGAGAATATTCATAAAAATTGGTGAAGGTGCAAGAATGACTTTGGTTGCATACATTACATGTTGGTTTTTCACCTTGTTCCCATTAAGTCGGTAGATTCATGTAGTGATGTTGAGCTAAAGGCAGCTCACTTTCACTTAAAATATATATGATGTAAATTTTGGTGCTGATACCCGAATGTCATATGTATGCCAAAAGAAAGTGGAATTCTGCCCNTTTTCGCCTAATTCAAATCATGCTTCAGGTACAAGCATTCCTTGTTGGTATCAACTACGCCCTGATCGTGCATGATGGTAATTAACTACCCTCCAAAACAAAATGCTGTTAGACA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00087	249956	253614	-

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0019789 SUMO transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000087s00008563.1	PF00179.21	UQ_con	24	72	1.70E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.794
SRR1783600	control	17.497
SRR1783602	moderate drought stress	14.612
SRR1811619	moderate drought stress	14.532

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.073
DRR006520	Root Summer glycyrrhizin high producing strain	40.187
DRR006521	Root Winter glycyrrhizin high producing strain	45.579
DRR006522	Root Winter glycyrrhizin high producing strain	44.328
DRR006523	Root Summer glycyrrhizin low producing strain	38.112
DRR006524	Root Summer glycyrrhizin low producing strain	36.702
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.183
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.242

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	66.702
SRR2868004	Drought Stress(Tissue:root)	64.458
SRR2967015	Control (Tissue:root)	61.550

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	61.987
SRR9715740	Leave	55.899
SRR9715741	Leave	67.220
SRR9715739	Root	20.908
SRR9715742	Root	28.465
SRR9715743	Root	27.861

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.419
SRR8749028	MeJA induced 9h	41.767
SRR8749029	MeJA induced 9h	66.696
SRR8749030	Uninduced	39.782
SRR8749031	Uninduced	37.033
SRR8749032	Uninduced	69.973

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	39.251
SRR8400027	Control-Root	38.389