Gene detail information of Glyur000088s00007693.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G22680.1 | 9.00E-23 | Zinc finger (C3HC4-type RING finger) family protein |
| NR | XP_004486386.1 | 0 | PREDICTED: uncharacterized protein LOC101502786 isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7ISN4|G7ISN4_MEDTR | 0 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES64616.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00088 | 46770 | 50796 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000088s00007693.1 | PF13639.1 | zf-RING_2 | 96 | 146 | 3.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.677 |
| SRR1783600 | control | 6.632 |
| SRR1783602 | moderate drought stress | 9.296 |
| SRR1811619 | moderate drought stress | 9.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.187 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.234 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.096 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.094 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.283 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.929 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.179 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.798 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.288 |
| SRR2967015 | Control (Tissue:root) | 11.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.300 |
| SRR9715740 | Leave | 0.624 |
| SRR9715741 | Leave | 1.313 |
| SRR9715739 | Root | 4.935 |
| SRR9715742 | Root | 7.914 |
| SRR9715743 | Root | 6.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.214 |
| SRR8749028 | MeJA induced 9h | 11.996 |
| SRR8749029 | MeJA induced 9h | 6.188 |
| SRR8749030 | Uninduced | 2.950 |
| SRR8749031 | Uninduced | 0.132 |
| SRR8749032 | Uninduced | 0.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.910 |
| SRR8400027 | Control-Root | 10.511 |