Gene detail information of Glyur000088s00007696.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G47780.10galacturonosyltransferase 4
NRXP_003535002.10PREDICTED: probable galacturonosyltransferase 4-like isoform 1 [Glycine max]
COGYP_005353111.15.00E-07glycosyl transferase, family 8 [Pediococcus claussenii ATCC BAA-344]
Swissprottr|Q93ZX7|GAUT4_ARATH0Probable galacturonosyltransferase 4
trEMBLtr|I1L071|I1L071_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G01980.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000886007464660-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13648GAUT EC:2.4.1.43 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

molecular_function

GO:0016757  transferase activity, transferring glycosyl groups

GO:0047262  polygalacturonate 4-alpha-galacturonosyltransferase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000088s00007696.1PF01501.15Glyco_transf_83396412.10E-70


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.430
SRR1783600control14.474
SRR1783602moderate drought stress9.847
SRR1811619moderate drought stress9.710

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.665
DRR006520Root Summer glycyrrhizin high producing strain17.489
DRR006521Root Winter glycyrrhizin high producing strain4.106
DRR006522Root Winter glycyrrhizin high producing strain3.967
DRR006523Root Summer glycyrrhizin low producing strain17.060
DRR006524Root Summer glycyrrhizin low producing strain17.019
DRR006525Leaf Summer glycyrrhizin high producing strain8.982
DRR006526Leaf Summer glycyrrhizin high producing strain8.875

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.330
SRR2868004Drought Stress(Tissue:root)15.889
SRR2967015Control (Tissue:root)16.030

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.860
SRR9715740Leave20.037
SRR9715741Leave13.563
SRR9715739Root4.008
SRR9715742Root23.644
SRR9715743Root18.682

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.910
SRR8749028MeJA induced 9h24.758
SRR8749029MeJA induced 9h18.677
SRR8749030Uninduced11.105
SRR8749031Uninduced10.628
SRR8749032Uninduced7.845

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.372
SRR8400027Control-Root22.343

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved