Gene detail information of Glyur000088s00007700.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G13300.10Transducin/WD40 repeat-like superfamily protein
NRXP_007147566.10hypothetical protein PHAVU_006G135300g [Phaseolus vulgaris]
COGYP_003899727.17.00E-07WD40 repeat-containing protein [Cyanothece sp. PCC 7822]
Swissprottr|Q9LTT8|VCS_ARATH0Enhancer of mRNA-decapping protein 4
trEMBLtr|V7BSL4|V7BSL4_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW19561.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000887493484471-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000088s00007700.1PF00400.27WD402673006.20E-05
Glyur000088s00007700.1PF00400.27WD403814110.0004


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control28.677
SRR1783600control29.076
SRR1783602moderate drought stress33.125
SRR1811619moderate drought stress33.313

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.936
DRR006520Root Summer glycyrrhizin high producing strain26.381
DRR006521Root Winter glycyrrhizin high producing strain23.979
DRR006522Root Winter glycyrrhizin high producing strain23.297
DRR006523Root Summer glycyrrhizin low producing strain28.551
DRR006524Root Summer glycyrrhizin low producing strain28.743
DRR006525Leaf Summer glycyrrhizin high producing strain10.683
DRR006526Leaf Summer glycyrrhizin high producing strain10.625

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.498
SRR2868004Drought Stress(Tissue:root)49.165
SRR2967015Control (Tissue:root)43.151

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.957
SRR9715740Leave14.270
SRR9715741Leave15.703
SRR9715739Root4.675
SRR9715742Root25.745
SRR9715743Root21.711

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.918
SRR8749028MeJA induced 9h21.548
SRR8749029MeJA induced 9h9.304
SRR8749030Uninduced14.877
SRR8749031Uninduced10.557
SRR8749032Uninduced7.067

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.039
SRR8400027Control-Root27.986

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved