Gene detail

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Gene detail information of Glyur000088s00007704.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57520.1	2.00E-173	seed imbibition 2
NR	XP_003534998.2	0	PREDICTED: probable galactinol--sucrose galactosyltransferase 2-like isoform X1 [Glycine max]
COG	YP_004464004.1	5.00E-38	raffinose synthase [Mahella australiensis 50-1 BON]
Swissprot	tr\|Q94A08\|RFS2_ARATH	0	Probable galactinol--sucrose galactosyltransferase 2
trEMBL	tr\|K7LBA9\|K7LBA9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G01940.2}

Sequence

Transcript Sequence

>Glyur000088s00007704.1
ATGGTACCCTCACTGTTAACGCCAACGTTGCACAGACTAAAGGACGTGCCTGATAACGCGGTGCTCAGTACGCCCTTCGACCACAGCTTCATCGGCGCCACCCATGCTGCTGCTGCCACTTCACGCCTTGTCTTCAAGCTTGGAGTCATCCGTTTACAATGTGGAGCCCTGCAAAAGTTTTTGTTGATCTGTTTTGAGTGGTGTTGCAGGGATGTCAGATTGATGTGCCTATACAGATTTAAGATTTGGTGGATGATACCACGATGGGGGAAGTCTGGGAAGGACATTCCTTTTGAAACTCAGATGTTGCTCTTGGAAGCAAGACAAGGAGCAGATTCTCAATTATCCAAGGAAGATAATTCATATATACTTTTCTTGCCAGTTCTAGATGGTGAATTTAGGAGCAGCTTGCAAGGAAATTCATCTAATGAATTGGAGCTTTGTGTTGAAAGTGGAGATCCAGCTGTAGNTACTTCCCAGTCCTTAAATGCTGTTTTCATGAATTATGGAGACCATCCATTTGATCTAGTGCAGGAATCCATCAAGCTTTTGATAGTGCAGAGTGGTAACTTTTCACTGAGGGAAACCAAGCAGGCTAGTCAGTTCACCTTTAGATCTTATAAAGCAATAANAATCCAGAAATTAAAAGGAAAGTTAAAACCAGGAACCCACTCACAATTTCATTTTAAAACACTTTTTGGTGCAGATGCCAGGAATATTGCTTTGGTTGGTGCACTTGGGATGCTTTTTATCACAGTGTTAATCCTCAGGGGATCAGGGATGGACTTAAGAGGAGGCACTCCAGCAAAATTCTTGATAATAGACGACGGATGGCAAGATACTGTTAATGAGTTTCAAAAAGATGGGGTGCCATTTATTGAAGGATCACAATTAGTGAGCATCAAAGAAAACAATAAATTTCGNACAACAGGAGATGTAACCAACAGTGGGGCACCAAATAGTCTAAAGGATTTTGTTACAGATATCAAGAGCACTTTTAGTCTCAAGTATGTATATGTATGGCACGCTCTATTGGGTTATTGGGGAGGGTTAGATCCAAACGCGTCTGGAACCAAGAAGTATGAACCAAGACTAAGATACCCAGTACAGTCACCAGGGAATTTGGCAAATACAAGGGATCTATNTTTGGATGCCATGGAGAAGTACGGTATTGGTGTCATTGATCCAGCAAAAGTTTCAGAATTTTATGATGATCTACGTAGTTATCTTGTTTCTCAGAATGTTGANGGGGTTAAGGTTGATGTTCAGAACATACTGGAAACTGTTTCAAGCGGTCTAGGAGGTTGTGTTTTTCTCACTAGACACTTTCAACAAGAGCTTGAAAAGTCCATTTCAACCAACTTTCAGGACAATAGCATAATCTGCTGCATGGNTCTGAGCACAGACTCCATTTACCAGAACTTGGCCTTTGGTACTTTTGGTAGGATGCCTCTGGGCTATTATCTCATTATTATCTCAATTTCTTCCACTTTAATGCATTCTTCCCTAGAGATGACATTGTTGCCCCCTCTTGGATTTTACATCTCAAAACAAAGTGCAATTACACGAGCATCTGATGACTACTATCCAAAAAAACCCACAACACAGTCTCTACATATAGCTGCTGTAGCTTTCAACCACATATTCCTTGGTGAAATTGTTGTACCAGACTGGGACATGTTCTATAGTCTCCATGATGCANCTGAGTTTCATGCAGTAGCTAGAGCAGTTGGAGGATGTGGAGTATATGTAAGTGACAAACCTGGCCAACATGATTTTAACATACTGAAAAAGCTTGNACTTCCTGATGGATCAGTGCTCAGAGGCAGATATCCTGGGAGACCATCACGTGATTGTTTATTTACTGATCCAGTTATGGATAGGAAGAGCCTTCTGAAGATCTGGAACTTGAACAAATATGGGGGAGTAATAGGCATCTTCAATTGCCAAGGAGCAGGTTCCTGGCCTGGTCTAGAAAGTAATGCTGAGGAAGATATCAATTTTGAACTATCAGGCAAGGTTTCTTCCTCAGATATCGAGTATTTTGAAGAGGTTTCGGTCGGGCAATGGACCCAAGATTNTGCAGTTTTTCGCTTCAGTACAGGGTCTCTAACACGACTATCAAAGGAAGAATCAATTGATGTCACAGTAAAAGTTTTGCACTGTGATGTGTTCACTGTATCTCCTATAAAGGTTTACAATCAAACAATTCAATTTGCACCGATAGGACTAACAAACATGTACAACTCTGGTGGAGCTGTTGAAGCAGTTGACTCCAGTGATTCTTCCGGATCTAAAATACACATAAANGGTAGAGGAGGAGGTGTCTTTGGAGCATACTCCAACTTAAAGCCAAAGTCTTGTTCTGTAAATTCTGAAAATATCGAGTTCCAATTTAGAGAGGAAGACAATTTGTTAACAACAAAAATTCCATCTAAAACCAGTTCATGGGACATCACCATCTGCTACTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00088	94616	100065	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH36

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000088s00007704.1	PF05691.7	Raffinose_syn	68	202	1.30E-36
Glyur000088s00007704.1	PF05691.7	Raffinose_syn	264	483	4.80E-60
Glyur000088s00007704.1	PF05691.7	Raffinose_syn	513	808	2.90E-104

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.283
SRR1783600	control	0.321
SRR1783602	moderate drought stress	0.386
SRR1811619	moderate drought stress	0.440

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.351
DRR006520	Root Summer glycyrrhizin high producing strain	0.339
DRR006521	Root Winter glycyrrhizin high producing strain	0.359
DRR006522	Root Winter glycyrrhizin high producing strain	0.353
DRR006523	Root Summer glycyrrhizin low producing strain	0.398
DRR006524	Root Summer glycyrrhizin low producing strain	0.336
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.293
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.331

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.621
SRR2868004	Drought Stress(Tissue:root)	2.151
SRR2967015	Control (Tissue:root)	2.315

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.431
SRR9715740	Leave	0.625
SRR9715741	Leave	0.369
SRR9715739	Root	0.060
SRR9715742	Root	0.105
SRR9715743	Root	0.257

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.191
SRR8749028	MeJA induced 9h	0.086
SRR8749029	MeJA induced 9h	0.027
SRR8749030	Uninduced	0.052
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.214
SRR8400027	Control-Root	1.382