Gene detail information of Glyur000088s00007722.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47770.1 | 7.00E-171 | farnesyl diphosphate synthase 1 |
| NR | ADE18770.1 | 0 | farnesyl-diphosphate synthase [Glycyrrhiza uralensis] |
| COG | YP_003697108.1 | 5.00E-20 | polyprenyl synthetase [Arcanobacterium haemolyticum DSM 20595] |
| Swissprot | tr|P49351|FPPS1_LUPAL | 0 | Farnesyl pyrophosphate synthase 1 |
| trEMBL | tr|D7NM49|D7NM49_GLYUR | 0 | Farnesyl-diphosphate synthase {ECO:0000313|EMBL:ADE18770.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00088 | 174393 | 178384 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00787 | FDPS | EC:2.5.1.1 2.5.1.10 | Terpenoid backbone biosynthesis | map00900 |
| HTLV-I infection | map05166 | |||
| Influenza A | map05164 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000088s00007722.1 | PF00348.12 | polyprenyl_synt | 34 | 303 | 2.10E-81 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 68.518 |
| SRR1783600 | control | 68.765 |
| SRR1783602 | moderate drought stress | 21.216 |
| SRR1811619 | moderate drought stress | 21.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 59.852 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 58.890 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.701 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.382 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.637 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.490 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.500 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 138.857 |
| SRR2868004 | Drought Stress(Tissue:root) | 70.912 |
| SRR2967015 | Control (Tissue:root) | 66.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 16.204 |
| SRR9715740 | Leave | 7.053 |
| SRR9715741 | Leave | 8.574 |
| SRR9715739 | Root | 41.507 |
| SRR9715742 | Root | 56.706 |
| SRR9715743 | Root | 54.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.953 |
| SRR8749028 | MeJA induced 9h | 26.006 |
| SRR8749029 | MeJA induced 9h | 24.631 |
| SRR8749030 | Uninduced | 24.905 |
| SRR8749031 | Uninduced | 19.507 |
| SRR8749032 | Uninduced | 8.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 101.528 |
| SRR8400027 | Control-Root | 116.173 |