Gene detail information of Glyur000088s00007737.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47660.1 | 1.00E-39 | Homeodomain-like superfamily protein |
| NR | XP_007147613.1 | 1.81E-146 | hypothetical protein PHAVU_006G139200g [Phaseolus vulgaris] |
| Swissprot | tr|Q39117|TGT2_ARATH | 9.00E-45 | Trihelix transcription factor GT-2 |
| trEMBL | tr|V7BNQ3|V7BNQ3_PHAVU | 7.00E-147 | Uncharacterized protein {ECO:0000313|EMBL:ESW19607.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00088 | 276431 | 278569 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Trihelix |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000088s00007737.1 | PF13837.1 | Myb_DNA-bind_4 | 226 | 311 | 1.90E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.414 |
| SRR1783600 | control | 6.587 |
| SRR1783602 | moderate drought stress | 8.370 |
| SRR1811619 | moderate drought stress | 8.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.187 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.937 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.932 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.913 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.477 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.961 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.872 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.324 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.322 |
| SRR2967015 | Control (Tissue:root) | 6.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.021 |
| SRR9715740 | Leave | 1.850 |
| SRR9715741 | Leave | 1.118 |
| SRR9715739 | Root | 0.689 |
| SRR9715742 | Root | 4.637 |
| SRR9715743 | Root | 3.986 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.110 |
| SRR8749028 | MeJA induced 9h | 11.590 |
| SRR8749029 | MeJA induced 9h | 13.413 |
| SRR8749030 | Uninduced | 8.292 |
| SRR8749031 | Uninduced | 6.523 |
| SRR8749032 | Uninduced | 5.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.776 |
| SRR8400027 | Control-Root | 7.078 |