Gene detail information of Glyur000088s00007739.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G14540.17.00E-55nuclear factor Y, subunit B3
NRXP_007147615.11.92E-85hypothetical protein PHAVU_006G139400g [Phaseolus vulgaris]
Swissprottr|O23310|NFYB3_ARATH8.00E-70Nuclear transcription factor Y subunit B-3
trEMBLtr|V7BNN5|V7BNN5_PHAVU7.00E-86Uncharacterized protein {ECO:0000313|EMBL:ESW19609.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00088288308288901-


Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005622  intracellular

GO:0005634  nucleus


molecular_function

GO:0043565  sequence-specific DNA binding

GO:0046982  protein heterodimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000088s00007739.1PF00808.18CBFD_NFYB_HMF28924.90E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control276.586
SRR1783600control286.620
SRR1783602moderate drought stress369.287
SRR1811619moderate drought stress384.777

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain333.940
DRR006520Root Summer glycyrrhizin high producing strain340.749
DRR006521Root Winter glycyrrhizin high producing strain5.448
DRR006522Root Winter glycyrrhizin high producing strain6.370
DRR006523Root Summer glycyrrhizin low producing strain278.269
DRR006524Root Summer glycyrrhizin low producing strain294.556
DRR006525Leaf Summer glycyrrhizin high producing strain83.999
DRR006526Leaf Summer glycyrrhizin high producing strain81.048

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)103.138
SRR2868004Drought Stress(Tissue:root)148.058
SRR2967015Control (Tissue:root)71.496

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave71.230
SRR9715740Leave157.675
SRR9715741Leave79.393
SRR9715739Root98.207
SRR9715742Root117.159
SRR9715743Root131.558

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.159
SRR8749028MeJA induced 9h15.111
SRR8749029MeJA induced 9h7.623
SRR8749030Uninduced2.478
SRR8749031Uninduced0.533
SRR8749032Uninduced1.813

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root134.642
SRR8400027Control-Root156.963

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved