Gene detail

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Gene detail information of Glyur000088s00007740.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16360.2	3.00E-70	5'-AMP-activated protein kinase beta-2 subunit protein
NR	XP_003546198.1	9.78E-120	PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Glycine max]
Swissprot	tr\|Q9SCY5\|KINB2_ARATH	9.00E-91	SNF1-related protein kinase regulatory subunit beta-2
trEMBL	tr\|I1MFR8\|I1MFR8_SOYBN	4.00E-120	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G12550.1}

Sequence

Transcript Sequence

>Glyur000088s00007740.1
GGGCAACATAAAAAAGGAGGTGCGATGATAACTAAACTAACGTAATAGGTGATTATTAGGTGCCCTCNCTCACTCACTCACTCTCAGTGGCGGCATACACAAACTGCCATCGGAAGAATACACACAGAAAGAGAGAACACTGCAGTGCACGTTGAAACTCCCAATTGGAATGGAAACTCGAGACTCGAGAGAGAGAGAGAGAAGTGAGTATATAATAATAAGGACCTCGTCAAGAATATGATGACGTGACCCATCATCACTCATTACAACCCCCTACCCCATTCTCACCACACCACACTCCCTTTCCAATTCCTTCTNCTTCTTCTTCTTCTCTAACACCAAATTCTCATTCCCTTTTTCTCACACCTTAATTTCCTTTCTCTTCTGACTAAAGGGGCTTTTTTTTTCTTCTCCTGATTCTGTTGGGGTGAATTGTAATTTGAACAATTTTGCTGCTGAGTCTCTTTCCCTTTCTCTGTATAAGTATAACGATGGGGAATGNGAATGGGAGAGAAGATGATGTGAACGGAACCCCATCGGAGGGTGAAGAGGATGAAAGAGACAGTGTGAGCNATTGCATGTCTGTGCCTGATGGGGTTGGGAACCCAGCACCGCCTCCTGAGTTGATGGGTCACTCTCCCCCTGCTAGCCCTAGAGCTACCCAATCCCCATTCATGTTCACCCCTCAAGTCCCGGTGGTTCCACTGCAAAGACCTGATGAGATGCATGTACCAAGCCCTTCCTGGATGCAAACTACTACGGGGTACGAGGATATGTACAATGAACTAGGAATCCCGACGATGATTACTTGGAGTTATGATGGCAAAGAAAATGCCCTTGCAGAGGTCGGGAAAGGACTTCACGATAATGAAGGTACTGCCATCGGGTGTTTACCAGATTATGTTCCTGAAGACATCGGAAGCATTTCTAGTTTTGAGCCTCCTAAATCACCAGACACTAGTTATAACAACTTACAACTAAGTTCTGAAGATTATGCAAAGGAGCCGCCGTTGGTTCCTCCATACATGCAAATGACACTTCTTAATGTTCCTTCGACAAATATGGAATTCCAACCTNTTATATCCAGACCTCAGCATGTAGTGCTCAATCATCTCTATATGCAGAAAGGGAAGGGAAGCCCTTCAGTGGTTGCACTTGGGACCACACATCGGTTTCTAGCCAAATATGTCACTGTGGTGCTGTACAAGTCTTTGCAGAGGTGAACATAAATGACATGGACCGGGTAGCCTTTATTAAAGCCTTGGATTTGTTAATACCGCTTCCAGCAGTACCATCTTAAGTGAGGAATTCTAAGCTCCATAAAGATATCATTACATGAAAGTCAAGATTGTATTACATATAATGCTCTTGCTTGATGGCCATCCATTCCATCATGCAATTTTAGTTCGAAACTTTTACA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00088	296018	299571	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM48

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000088s00007740.1	PF04739.10	AMPKBI	164	240	5.30E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.687
SRR1783600	control	30.515
SRR1783602	moderate drought stress	25.302
SRR1811619	moderate drought stress	25.368

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.770
DRR006520	Root Summer glycyrrhizin high producing strain	35.211
DRR006521	Root Winter glycyrrhizin high producing strain	37.423
DRR006522	Root Winter glycyrrhizin high producing strain	36.392
DRR006523	Root Summer glycyrrhizin low producing strain	23.098
DRR006524	Root Summer glycyrrhizin low producing strain	23.825
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.077
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.504

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	20.760
SRR2868004	Drought Stress(Tissue:root)	13.353
SRR2967015	Control (Tissue:root)	15.531

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	9.251
SRR9715740	Leave	9.305
SRR9715741	Leave	9.442
SRR9715739	Root	13.357
SRR9715742	Root	18.011
SRR9715743	Root	19.027

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.743
SRR8749028	MeJA induced 9h	9.600
SRR8749029	MeJA induced 9h	9.321
SRR8749030	Uninduced	2.661
SRR8749031	Uninduced	0.888
SRR8749032	Uninduced	0.532

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	26.688
SRR8400027	Control-Root	28.793