Gene detail information of Glyur000089s00008776.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT4G34880.1 | 3.00E-128 | Amidase family protein |
NR | CAN80909.1 | 0 | hypothetical protein VITISV_016638 [Vitis vinifera] |
COG | YP_003321515.1 | 6.00E-96 | Amidase [Sphaerobacter thermophilus DSM 20745] |
Swissprot | tr|E0CTY1|GATA_VITVI | 5.00E-18 | Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03150} (Precursor) |
trEMBL | tr|F6I120|F6I120_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB60636.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00089 | 45215 | 47638 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K01426 | E3.5.1.4, amiE | EC:3.5.1.4 | Arginine and proline metabolism | map00330 |
Phenylalanine metabolism | map00360 | |||
Tryptophan metabolism | map00380 | |||
Aminobenzoate degradation | map00627 | |||
Styrene degradation | map00643 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000089s00008776.1 | PF01425.16 | Amidase | 61 | 444 | 1.90E-63 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 18.673 |
SRR1783600 | control | 18.556 |
SRR1783602 | moderate drought stress | 15.487 |
SRR1811619 | moderate drought stress | 15.229 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 0.109 |
SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
SRR2967015 | Control (Tissue:root) | 0.060 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 58.045 |
SRR9715740 | Leave | 0.935 |
SRR9715741 | Leave | 13.565 |
SRR9715739 | Root | 0.487 |
SRR9715742 | Root | 0.544 |
SRR9715743 | Root | 0.105 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.000 |
SRR8749028 | MeJA induced 9h | 0.000 |
SRR8749029 | MeJA induced 9h | 0.000 |
SRR8749030 | Uninduced | 0.022 |
SRR8749031 | Uninduced | 0.000 |
SRR8749032 | Uninduced | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 3.752 |
SRR8400027 | Control-Root | 36.814 |