Gene detail information of Glyur000089s00008776.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34880.13.00E-128Amidase family protein
NRCAN80909.10hypothetical protein VITISV_016638 [Vitis vinifera]
COGYP_003321515.16.00E-96Amidase [Sphaerobacter thermophilus DSM 20745]
Swissprottr|E0CTY1|GATA_VITVI5.00E-18Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03150} (Precursor)
trEMBLtr|F6I120|F6I120_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB60636.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000894521547638-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01426E3.5.1.4, amiE EC:3.5.1.4 Arginine and proline metabolism map00330
Phenylalanine metabolismmap00360
Tryptophan metabolismmap00380
Aminobenzoate degradationmap00627
Styrene degradationmap00643


Gene Ontology

molecular_function

GO:0016884  carbon-nitrogen ligase activity, with glutamine as amido-N-donor



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000089s00008776.1PF01425.16Amidase614441.90E-63


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.673
SRR1783600control18.556
SRR1783602moderate drought stress15.487
SRR1811619moderate drought stress15.229

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain0.000
DRR006526Leaf Summer glycyrrhizin high producing strain0.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.109
SRR2868004Drought Stress(Tissue:root)0.000
SRR2967015Control (Tissue:root)0.060

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave58.045
SRR9715740Leave0.935
SRR9715741Leave13.565
SRR9715739Root0.487
SRR9715742Root0.544
SRR9715743Root0.105

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.022
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.752
SRR8400027Control-Root36.814