Gene detail information of Glyur000089s00008777.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15720.1 | 2.00E-12 | TRF-like 5 |
| NR | XP_007136185.1 | 1.15E-52 | hypothetical protein PHAVU_009G025400g [Phaseolus vulgaris] |
| Swissprot | tr|Q6WLH3|SMH5_MAIZE | 1.00E-08 | Single myb histone 5 |
| trEMBL | tr|V7ARJ6|V7ARJ6_PHAVU | 4.00E-53 | Uncharacterized protein {ECO:0000313|EMBL:ESW08179.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00089 | 60929 | 64285 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000089s00008777.2 | PF00249.26 | Myb_DNA-binding | 198 | 246 | 1.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.980 |
| SRR1783600 | control | 14.290 |
| SRR1783602 | moderate drought stress | 20.188 |
| SRR1811619 | moderate drought stress | 19.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.589 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.877 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.085 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.422 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.144 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.542 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.235 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.780 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.458 |
| SRR2967015 | Control (Tissue:root) | 11.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.486 |
| SRR9715740 | Leave | 11.894 |
| SRR9715741 | Leave | 14.292 |
| SRR9715739 | Root | 0.621 |
| SRR9715742 | Root | 4.092 |
| SRR9715743 | Root | 2.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.860 |
| SRR8749028 | MeJA induced 9h | 17.308 |
| SRR8749029 | MeJA induced 9h | 21.624 |
| SRR8749030 | Uninduced | 23.749 |
| SRR8749031 | Uninduced | 20.307 |
| SRR8749032 | Uninduced | 13.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.590 |
| SRR8400027 | Control-Root | 12.187 |