Gene detail

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Gene detail information of Glyur000089s00008783.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G34860.2	Plant neutral invertase family protein
NR	XP_004500744.1	PREDICTED: uncharacterized protein LOC101500758 [Cicer arietinum]
COG	YP_007129106.1	neutral invertase [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q9SW48\|INVB_ARATH	Probable alkaline/neutral invertase B {ECO:0000305}
trEMBL	tr\|K7KHF4\|K7KHF4_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G00750.3}

Sequence

Transcript Sequence

>Glyur000089s00008783.1
GCACCACGTACGGTGGCAGAAAGTGAGGAATTTGATTTCTCTAAAGCATTAGATAGGCCAAGGCCTTTGAACATAGAGAGACAAAGATCATGTGATGAAAGATCAATGAGTGAACTATCAATAGGCTTTTCTCCACGTCAATTGTCAACAAAAACTGAGAGCTATTCTCGCTTGGCAGAACATTTTGATAATGCAATATTCTCTCCTATGCCAAAATCAGGAATCAATACCCCAAGATCACTGACAGTACTGGACCCGCATCCAATATTACCTGAAGCTTGGGAAGCTTTGAGGCGTTCCTTGGTATATTTTCGTGGTCAGCCNGTTGGGACAATTGCCGCCTTGGATAATTCTGATGAGAAGCTTAATTATGATCAGGTTTTTGTGAGAGATTTTGTCCCAAGTGCTCTGGCTTTTCTGATGCGTGGTGAACCAGACATTGTTAAAAATTTTATCCTGAAGACTCTTCGCCTTCAATCATGGGAGAAAAAAATTGATAGGTTCCAGCTTGCAGAAGGGGTAATGCCTGCTAGTTTTAAGGTATTCCATGATCCTGTCAGAAACCATGAAACCCTGATAGCAGATTTTGGTGAAAGTGCAATAGGCAGGGTAGCTCCTGTTGATTCTGGATTTTGGTGGATTATATTACTTCGTGCATACACAAAATCTACCGGAGACTCTTCCTTGGCTGAACGGCCTGAATGTCAAAAGGGCATGCGCTTGATCCTGAGTCTGTGCCTGTCAGAGGGGTTTGACACGTTCCCAACGTTACTATGTGCTGATGGATGCTGTATGATTGATCGTAGAATGGGTGTTTATGGCTATCCAATTGAAATTCAAGCATTGTTCTTCATGGCTTTAAGATGTGCCTTGCAATTGCTTAAGCAAGATGCTGAAGGGAAAGAGTTTATGGAACGAATTGTGAAACGCTTGCATGCCTTAAGCTATCATATGAGAAGCTACTTTTGGTTGGACTTGAAGCAACTTAATGATGTATATCGCTTCAAAACAGAAGAGTACTCACATACTGCTGTCAACAAGTTCAATGTTATTCCTGATTCTCTACCGGATTGGATTTTTGATTTCATGCCTCCTCATGGTGGATACTTTGTTGGGAATGTCAGTCCAGCTAGGATGGATTTCCGTTGGTTTTGCCTGGGTAATTGCATTGCAATCTTATCCTGCTTGGCAACTCCTGAGCAGTCCGTTGCAATCATGGATCTCATAGAATCACGGTGGCAGGAATTAATTGGGGAGATGCCTGTCAAAGTTTGTTATCCAGCCATTGAAAGCCATGAATGGAGGCTCGTAACAGGATGCGACCCAAAAAATACTAGATGGAGTTACCACAACGGGGGATCTTGGCCAGTTCTCTTATGGCTTCTGTCTGCGGCCTCCATCAAGACTGGACGACCCCAAATCGCAAGACGTGCCCTTCAGATTGCTGAGGCCAGATTGCTAAAGGACAACTGGCCTGAATATTATGATGGAACGCTTGGTCGATACATTGGGAAGCAGGCCCGTAAATTCCAGACCTGGTCTATTGCGGGTTACCTGGTGGCTAGGATGATGCTCGATGATCCTTCACATGTGGGCATCATAGCACTGGAAGAAGACAGACTGCTAAAGCCTTTGCTCAAGAGATCAAATTCATGGACTTTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00089	85370	87859	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH100

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000089s00008783.1	PF12899.2	Glyco_hydro_100	92	528	1.40E-219

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.197
SRR1783600	control	1.153
SRR1783602	moderate drought stress	0.566
SRR1811619	moderate drought stress	0.691

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.912
DRR006520	Root Summer glycyrrhizin high producing strain	0.966
DRR006521	Root Winter glycyrrhizin high producing strain	2.155
DRR006522	Root Winter glycyrrhizin high producing strain	2.137
DRR006523	Root Summer glycyrrhizin low producing strain	0.066
DRR006524	Root Summer glycyrrhizin low producing strain	0.050
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.045
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.163

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.592
SRR2868004	Drought Stress(Tissue:root)	0.294
SRR2967015	Control (Tissue:root)	0.522

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.591
SRR9715740	Leave	0.171
SRR9715741	Leave	0.114
SRR9715739	Root	1.664
SRR9715742	Root	1.484
SRR9715743	Root	1.394

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.161
SRR8749028	MeJA induced 9h	0.041
SRR8749029	MeJA induced 9h	0.167
SRR8749030	Uninduced	0.103
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.015

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.039
SRR8400027	Control-Root	3.214