Gene detail information of Glyur000089s00008801.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G38890.10FMN-linked oxidoreductases superfamily protein
NRXP_003522816.10PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Glycine max]
COGYP_001179406.12.00E-42putative TIM-barrel protein, nifR3 family [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprottr|Q9T0J6|DUS3L_ARATH0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
trEMBLtr|K7KHG3|K7KHG3_SOYBN0tRNA-dihydrouridine(47) synthase [NAD(P)(+)] {ECO:0000256|RuleBase:RU291113}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00089175618183601-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0008033  tRNA processing

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0017150  tRNA dihydrouridine synthase activity

GO:0046872  metal ion binding

GO:0050660  flavin adenine dinucleotide binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000089s00008801.1PF01207.12Dus3285621.60E-49


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.604
SRR1783600control13.478
SRR1783602moderate drought stress11.055
SRR1811619moderate drought stress10.939

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.083
DRR006520Root Summer glycyrrhizin high producing strain12.564
DRR006521Root Winter glycyrrhizin high producing strain12.100
DRR006522Root Winter glycyrrhizin high producing strain11.550
DRR006523Root Summer glycyrrhizin low producing strain7.190
DRR006524Root Summer glycyrrhizin low producing strain6.914
DRR006525Leaf Summer glycyrrhizin high producing strain9.651
DRR006526Leaf Summer glycyrrhizin high producing strain9.797

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.771
SRR2868004Drought Stress(Tissue:root)15.704
SRR2967015Control (Tissue:root)15.808

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.213
SRR9715740Leave14.078
SRR9715741Leave8.456
SRR9715739Root5.776
SRR9715742Root10.676
SRR9715743Root10.595

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.413
SRR8749028MeJA induced 9h13.238
SRR8749029MeJA induced 9h10.132
SRR8749030Uninduced2.887
SRR8749031Uninduced1.421
SRR8749032Uninduced1.145

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.601
SRR8400027Control-Root14.733

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved