Gene detail information of Glyur000089s00008802.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34710.20arginine decarboxylase 2
NRXP_003522832.10PREDICTED: arginine decarboxylase-like [Glycine max]
COGYP_007161911.13.00E-145arginine decarboxylase [Cyanobacterium aponinum PCC 10605]
Swissprottr|Q39827|SPE1_SOYBN0Arginine decarboxylase
trEMBLtr|I1JSI5|I1JSI5_SOYBN0Arginine decarboxylase {ECO:0000256|RuleBase:RU003740}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00089193069197548+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01583E4.1.1.19 EC:4.1.1.19 Arginine and proline metabolism map00330


Gene Ontology

biological_process

GO:0006527  arginine catabolic process

GO:0008295  spermidine biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0008792  arginine decarboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000089s00008802.1PF02784.11Orn_Arg_deC_N1964501.10E-36
Glyur000089s00008802.1PF00278.17Orn_DAP_Arg_deC5456516.50E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.609
SRR1783600control3.449
SRR1783602moderate drought stress2.275
SRR1811619moderate drought stress2.049

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.766
DRR006520Root Summer glycyrrhizin high producing strain10.230
DRR006521Root Winter glycyrrhizin high producing strain2.543
DRR006522Root Winter glycyrrhizin high producing strain2.363
DRR006523Root Summer glycyrrhizin low producing strain6.521
DRR006524Root Summer glycyrrhizin low producing strain7.016
DRR006525Leaf Summer glycyrrhizin high producing strain3.427
DRR006526Leaf Summer glycyrrhizin high producing strain3.334

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)57.855
SRR2868004Drought Stress(Tissue:root)70.914
SRR2967015Control (Tissue:root)37.881

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.418
SRR9715740Leave4.229
SRR9715741Leave5.283
SRR9715739Root74.917
SRR9715742Root25.497
SRR9715743Root36.549

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h60.863
SRR8749028MeJA induced 9h42.930
SRR8749029MeJA induced 9h69.664
SRR8749030Uninduced47.091
SRR8749031Uninduced25.068
SRR8749032Uninduced28.295

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.900
SRR8400027Control-Root24.051

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved