Gene detail information of Glyur000089s00008807.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34710.20arginine decarboxylase 2
NRXP_003522832.10PREDICTED: arginine decarboxylase-like [Glycine max]
COGYP_005070592.13.00E-168arginine decarboxylase [Arthrospira platensis NIES-39]
Swissprottr|Q39827|SPE1_SOYBN0Arginine decarboxylase
trEMBLtr|I1JSI5|I1JSI5_SOYBN0Arginine decarboxylase {ECO:0000256|RuleBase:RU003740}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00089209809211944+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01583E4.1.1.19 EC:4.1.1.19 Arginine and proline metabolism map00330


Gene Ontology

biological_process

GO:0006527  arginine catabolic process

GO:0008295  spermidine biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0008792  arginine decarboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000089s00008807.1PF02784.11Orn_Arg_deC_N1314008.80E-56
Glyur000089s00008807.1PF00278.17Orn_DAP_Arg_deC4956015.70E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.515
SRR1783600control5.796
SRR1783602moderate drought stress3.281
SRR1811619moderate drought stress3.324

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.204
DRR006520Root Summer glycyrrhizin high producing strain12.874
DRR006521Root Winter glycyrrhizin high producing strain3.351
DRR006522Root Winter glycyrrhizin high producing strain3.563
DRR006523Root Summer glycyrrhizin low producing strain8.541
DRR006524Root Summer glycyrrhizin low producing strain8.939
DRR006525Leaf Summer glycyrrhizin high producing strain4.762
DRR006526Leaf Summer glycyrrhizin high producing strain4.605

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)102.319
SRR2868004Drought Stress(Tissue:root)120.815
SRR2967015Control (Tissue:root)71.561

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.381
SRR9715740Leave10.025
SRR9715741Leave8.037
SRR9715739Root166.609
SRR9715742Root47.860
SRR9715743Root69.924

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h136.624
SRR8749028MeJA induced 9h94.370
SRR8749029MeJA induced 9h174.767
SRR8749030Uninduced115.241
SRR8749031Uninduced53.295
SRR8749032Uninduced102.301

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.782
SRR8400027Control-Root50.561

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved