Gene detail information of Glyur000089s00008815.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39010.1 | 0 | glycosyl hydrolase 9B18 |
| NR | XP_004500766.1 | 0 | PREDICTED: endoglucanase 24-like isoform X1 [Cicer arietinum] |
| COG | YP_290232.1 | 3.00E-88 | endoglucanase [Thermobifida fusca YX] |
| Swissprot | tr|Q93YQ7|GUN24_ARATH | 0 | Endoglucanase 24 (Precursor) |
| trEMBL | tr|G7J7T2|G7J7T2_MEDTR | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00089 | 236385 | 242353 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01179 | E3.2.1.4 | EC:3.2.1.4 | Starch and sucrose metabolism | map00500 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000089s00008815.1 | PF00759.14 | Glyco_hydro_9 | 27 | 485 | 2.90E-161 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.599 |
| SRR1783600 | control | 5.639 |
| SRR1783602 | moderate drought stress | 2.999 |
| SRR1811619 | moderate drought stress | 3.012 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.939 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.849 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.410 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.355 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.072 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.341 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.558 |
| SRR2967015 | Control (Tissue:root) | 6.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.468 |
| SRR9715740 | Leave | 0.263 |
| SRR9715741 | Leave | 0.621 |
| SRR9715739 | Root | 3.252 |
| SRR9715742 | Root | 3.174 |
| SRR9715743 | Root | 3.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.002 |
| SRR8749030 | Uninduced | 0.002 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.327 |
| SRR8400027 | Control-Root | 8.291 |