Gene detail information of Glyur000089s00008818.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G16485.10nucleic acid binding;zinc ion binding;DNA binding
NRXP_007135922.10hypothetical protein PHAVU_009G003300g [Phaseolus vulgaris]
COGYP_001019253.15.00E-06hypothetical protein Mpe_A0056 [Methylibium petroleiphilum PM1]
Swissprottr|Q9SIV5|C3H19_ARATH0Zinc finger CCCH domain-containing protein 19
trEMBLtr|V7AUM1|V7AUM1_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW07916.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00089250468261525-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006352  DNA-templated transcription, initiation

GO:0016570  histone modification


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000089s00008818.1PF02201.13SWIB4855542.40E-19
Glyur000089s00008818.1PF03126.13Plus-36197232.50E-24
Glyur000089s00008818.1PF02213.11GYF95110023.90E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.632
SRR1783600control18.614
SRR1783602moderate drought stress25.578
SRR1811619moderate drought stress25.579

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.488
DRR006520Root Summer glycyrrhizin high producing strain22.044
DRR006521Root Winter glycyrrhizin high producing strain35.257
DRR006522Root Winter glycyrrhizin high producing strain34.234
DRR006523Root Summer glycyrrhizin low producing strain21.826
DRR006524Root Summer glycyrrhizin low producing strain22.088
DRR006525Leaf Summer glycyrrhizin high producing strain15.676
DRR006526Leaf Summer glycyrrhizin high producing strain15.670

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.979
SRR2868004Drought Stress(Tissue:root)35.740
SRR2967015Control (Tissue:root)33.634

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.914
SRR9715740Leave18.923
SRR9715741Leave18.824
SRR9715739Root5.968
SRR9715742Root23.372
SRR9715743Root19.999

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.925
SRR8749028MeJA induced 9h23.376
SRR8749029MeJA induced 9h12.468
SRR8749030Uninduced10.400
SRR8749031Uninduced7.336
SRR8749032Uninduced9.719

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.881
SRR8400027Control-Root30.594

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved