Gene detail information of Glyur000089s00008825.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34640.10squalene synthase 1
NRADG36702.10squalene synthase 1 [Glycyrrhiza uralensis]
COGYP_004346033.16.00E-79farnesyl-diphosphate farnesyltransferase [Fluviicola taffensis DSM 16823]
Swissprottr|P53800|FDFT_NICBE0Squalene synthase
trEMBLtr|D6QX38|D6QX38_GLYUR0Squalene synthase 1 {ECO:0000313|EMBL:ADG36702.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00089314565319554-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00801FDFT1 EC:2.5.1.21 Steroid biosynthesis map00100
Sesquiterpenoid and triterpenoid biosynthesismap00909


Gene Ontology

biological_process

GO:0008610  lipid biosynthetic process

GO:0009058  biosynthetic process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0004310  farnesyl-diphosphate farnesyltransferase activity

GO:0016740  transferase activity

GO:0016765  transferase activity, transferring alkyl or aryl (other than methyl) groups

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000089s00008825.1PF00494.14SQS_PSY453143.60E-43


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control52.737
SRR1783600control52.399
SRR1783602moderate drought stress44.713
SRR1811619moderate drought stress43.628

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain53.911
DRR006520Root Summer glycyrrhizin high producing strain52.104
DRR006521Root Winter glycyrrhizin high producing strain2.670
DRR006522Root Winter glycyrrhizin high producing strain2.415
DRR006523Root Summer glycyrrhizin low producing strain17.753
DRR006524Root Summer glycyrrhizin low producing strain18.173
DRR006525Leaf Summer glycyrrhizin high producing strain6.138
DRR006526Leaf Summer glycyrrhizin high producing strain6.186

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)89.428
SRR2868004Drought Stress(Tissue:root)38.105
SRR2967015Control (Tissue:root)41.719

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.211
SRR9715740Leave4.451
SRR9715741Leave4.850
SRR9715739Root20.240
SRR9715742Root59.427
SRR9715743Root50.957

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.062
SRR8749028MeJA induced 9h9.575
SRR8749029MeJA induced 9h8.867
SRR8749030Uninduced0.688
SRR8749031Uninduced0.227
SRR8749032Uninduced1.621

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root94.127
SRR8400027Control-Root118.267

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved