Gene detail information of Glyur000089s00008831.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75540.1 | 2.00E-45 | salt tolerance homolog2 |
| NR | XP_003523511.1 | 2.69E-107 | PREDICTED: B-box zinc finger protein 20-like [Glycine max] |
| Swissprot | tr|Q9LQZ7|BBX21_ARATH | 1.00E-61 | B-box zinc finger protein 21 {ECO:0000303|PubMed:19920209} |
| trEMBL | tr|I1JSK5|I1JSK5_SOYBN | 6.00E-108 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G01120.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00089 | 350216 | 351164 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | DBB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000089s00008831.1 | PF00643.19 | zf-B_box | 4 | 35 | 3.40E-05 |
| Glyur000089s00008831.1 | PF00643.19 | zf-B_box | 56 | 92 | 8.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.418 |
| SRR1783600 | control | 0.333 |
| SRR1783602 | moderate drought stress | 0.511 |
| SRR1811619 | moderate drought stress | 0.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.760 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.753 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.540 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.523 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.708 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.568 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.926 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.147 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.294 |
| SRR2967015 | Control (Tissue:root) | 1.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.093 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.149 |
| SRR9715739 | Root | 0.066 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.071 |
| SRR8749028 | MeJA induced 9h | 0.162 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.036 |
| SRR8400027 | Control-Root | 1.825 |