Gene detail information of Glyur000089s00008833.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66350.1 | 4.00E-30 | Lateral root primordium (LRP) protein-related |
| NR | XP_007131783.1 | 2.08E-61 | hypothetical protein PHAVU_011G041200g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SJT8|SRS3_ARATH | 1.00E-39 | Protein SHI RELATED SEQUENCE 3 |
| trEMBL | tr|V7ADZ4|V7ADZ4_PHAVU | 8.00E-62 | Uncharacterized protein {ECO:0000313|EMBL:ESW03777.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00089 | 364942 | 365998 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SRS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000089s00008833.1 | PF05142.7 | DUF702 | 3 | 141 | 1.10E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.494 |
| SRR1783600 | control | 2.703 |
| SRR1783602 | moderate drought stress | 1.279 |
| SRR1811619 | moderate drought stress | 1.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.372 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.414 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.322 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.279 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.283 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.299 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.898 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.937 |
| SRR2967015 | Control (Tissue:root) | 3.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.584 |
| SRR9715742 | Root | 0.983 |
| SRR9715743 | Root | 1.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 89.897 |
| SRR8749028 | MeJA induced 9h | 47.727 |
| SRR8749029 | MeJA induced 9h | 52.133 |
| SRR8749030 | Uninduced | 43.112 |
| SRR8749031 | Uninduced | 10.695 |
| SRR8749032 | Uninduced | 18.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.809 |
| SRR8400027 | Control-Root | 0.497 |