Gene detail information of Glyur000090s00011394.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04390.1 | 1.00E-100 | BTB/POZ domain-containing protein |
| NR | XP_004488836.1 | 0 | PREDICTED: BTB/POZ domain-containing protein At1g04390-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|P93820|Y1439_ARATH | 0 | BTB/POZ domain-containing protein At1g04390 |
| trEMBL | tr|A0A072VJP6|A0A072VJP6_MEDTR | 0 | BTB/POZ domain protein {ECO:0000313|EMBL:KEH38345.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00090 | 92118 | 100177 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TRAF |
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000090s00011394.1 | PF00651.26 | BTB | 670 | 782 | 4.40E-05 |
| Glyur000090s00011394.1 | PF00651.26 | BTB | 855 | 918 | 1.70E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.466 |
| SRR1783600 | control | 2.496 |
| SRR1783602 | moderate drought stress | 3.755 |
| SRR1811619 | moderate drought stress | 3.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.068 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.009 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.244 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.229 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.606 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.412 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.692 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.259 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.632 |
| SRR2967015 | Control (Tissue:root) | 10.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.216 |
| SRR9715740 | Leave | 4.158 |
| SRR9715741 | Leave | 3.196 |
| SRR9715739 | Root | 0.306 |
| SRR9715742 | Root | 3.436 |
| SRR9715743 | Root | 2.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.135 |
| SRR8749028 | MeJA induced 9h | 4.605 |
| SRR8749029 | MeJA induced 9h | 1.883 |
| SRR8749030 | Uninduced | 5.983 |
| SRR8749031 | Uninduced | 4.135 |
| SRR8749032 | Uninduced | 2.916 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.142 |
| SRR8400027 | Control-Root | 7.776 |