Gene detail information of Glyur000090s00011412.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33580.1 | 5.00E-28 | Protein kinase superfamily protein |
| NR | BAI79286.1 | 2.17E-50 | LysM type receptor kinase [Lotus japonicus] |
| COG | YP_002355445.1 | 2.00E-13 | serine/threonine protein kinase [Thauera sp. MZ1T] |
| Swissprot | tr|O22808|LYK5_ARATH | 2.00E-31 | Protein LYK5 (Precursor) |
| trEMBL | tr|D3KU55|D3KU55_LOTJA | 8.00E-51 | LysM type receptor kinase {ECO:0000313|EMBL:BAI79286.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00090 | 233646 | 236476 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.1.3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000090s00011412.1 | PF00069.20 | Pkinase | 60 | 143 | 5.40E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.053 |
| SRR1783600 | control | 0.026 |
| SRR1783602 | moderate drought stress | 0.213 |
| SRR1811619 | moderate drought stress | 0.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.451 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.223 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.231 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.562 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.389 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.228 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.137 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.274 |
| SRR2967015 | Control (Tissue:root) | 0.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.074 |
| SRR8749028 | MeJA induced 9h | 0.210 |
| SRR8749029 | MeJA induced 9h | 0.147 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.122 |
| SRR8400027 | Control-Root | 0.097 |