Gene detail information of Glyur000090s00011413.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G42270.10U5 small nuclear ribonucleoprotein helicase
NRXP_006598183.10PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like isoform X1 [Glycine max]
COGYP_005838828.13.00E-76DEAD/DEAH box helicase [Haloquadratum walsbyi C23]
Swissprottr|Q588V7|TEB_ARATH2.00E-29Helicase and polymerase-containing protein TEBICHI
trEMBLtr|K7MDW5|K7MDW5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G40460.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00090236645245321+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12854SNRNP200, BRR2 EC:3.6.4.13 Spliceosome map03040


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005515  protein binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000090s00011413.1PF00270.24DEAD5226991.30E-29
Glyur000090s00011413.1PF00271.26Helicase_C8208992.20E-08
Glyur000090s00011413.1PF02889.11Sec63102213268.40E-108
Glyur000090s00011413.1PF00270.24DEAD136915379.80E-26
Glyur000090s00011413.1PF02889.11Sec63185421712.90E-95


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.956
SRR1783600control23.763
SRR1783602moderate drought stress28.089
SRR1811619moderate drought stress28.154

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.803
DRR006520Root Summer glycyrrhizin high producing strain22.509
DRR006521Root Winter glycyrrhizin high producing strain21.145
DRR006522Root Winter glycyrrhizin high producing strain20.805
DRR006523Root Summer glycyrrhizin low producing strain22.359
DRR006524Root Summer glycyrrhizin low producing strain22.177
DRR006525Leaf Summer glycyrrhizin high producing strain11.344
DRR006526Leaf Summer glycyrrhizin high producing strain11.347

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)42.485
SRR2868004Drought Stress(Tissue:root)39.595
SRR2967015Control (Tissue:root)44.530

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.694
SRR9715740Leave15.109
SRR9715741Leave15.820
SRR9715739Root8.421
SRR9715742Root41.022
SRR9715743Root36.668

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.957
SRR8749028MeJA induced 9h22.438
SRR8749029MeJA induced 9h9.279
SRR8749030Uninduced7.277
SRR8749031Uninduced3.759
SRR8749032Uninduced4.601

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.482
SRR8400027Control-Root31.555

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved