Gene detail information of Glyur000090s00011432.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G03170.1 | 2.00E-19 | SKP1-like 14 |
| NR | XP_004488771.1 | 8.08E-40 | PREDICTED: SKP1-like protein 14-like [Cicer arietinum] |
| Swissprot | tr|O81057|ASK14_ARATH | 6.00E-27 | SKP1-like protein 14 |
| trEMBL | tr|A0A061FAW2|A0A061FAW2_THECC | 9.00E-38 | SKP1-like protein 1A, putative {ECO:0000313|EMBL:EOY14146.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00090 | 344943 | 345434 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | SKP1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000090s00011432.1 | PF03931.10 | Skp1_POZ | 8 | 68 | 1.90E-09 |
| Glyur000090s00011432.1 | PF01466.14 | Skp1 | 84 | 156 | 1.50E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.767 |
| SRR1783600 | control | 0.880 |
| SRR1783602 | moderate drought stress | 0.077 |
| SRR1811619 | moderate drought stress | 0.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.100 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.001 |
| SRR8749030 | Uninduced | 0.051 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.102 |
| SRR8400027 | Control-Root | 0.021 |