Gene detail

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Gene detail information of Glyur000091s00010511.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67750.1	3.00E-150	Pectate lyase family protein
NR	XP_003524720.1	0	PREDICTED: pectate lyase-like [Glycine max]
COG	YP_003976318.1	1.00E-16	pectate lyase family protein [Achromobacter xylosoxidans A8]
Swissprot	tr\|Q9LTZ0\|PLY11_ARATH	0	Putative pectate lyase 11 (Precursor)
trEMBL	tr\|V7C0A3\|V7C0A3_PHAVU	0	Pectate lyase {ECO:0000256\|RuleBase:RU361123}

Sequence

Transcript Sequence

>Glyur000091s00010511.1
TCCTCACACCCCTTCAATTTCACTCTTCACAAAAGAAGAGAATAGCAAAATTAAAATGACTCCCTTTTCATGCTTCCTCATTCTTTTTGCTATCTCTCTTCTTCTAACCCCAAATCTTGTTTCCTCCTCCAAAGTTCAAGACCCTGAACTAGTTGTCCAAGAGGTACAAAGGAGCATCAATGCCTCTAGGAGAAACTTGGGTTATCTATCATGTGGAACAGGGAACCCCATTGATGATTGTTGGAGGTGTGACCCAAATTGGGAGAACAACAGGCAGAGGCTAGCAGATTGTGCAATTGGGTTTGGCAAGGATGCAATTGGTGGAAGGAATGGCCAAATTGTCACAGACTCAGGTGATGATGACCCAGTGAACCCAAAGCCAGGGACACTAAGGTATGGTGCAATACAAGATGANCCATTATGGATCATCTTCAAGAGAGACATGGTGATCACATTGAAAGAAGAGCTGTTGGTGAATTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTGGTGGTGGATGCATAACCATACATTATGTGAGCAACATCATCATCCATGGTATTCACATTCATGATTGTAAGCCAACTGGGAACACCAATATTAGAGACTCNCCACATCACTCTGGATTTTGGACTGTGTCTGATGGTGATGGGGTTTCAATTTTTAATTCAAAGCATATTTGGGTTGATCATTGTTCCTTGTCTAATTGCCGGGATGGTCTCATTGATGCCATCCATGGATCCACTGCTATTACCATCTCCAACAACTACATGACCCATCATGACAAGGTCATGCTTTTGGGACATAGTGATTCTTATACACAGGACAAGGACATGCAGGTCACTATTGCATTCAATCATTTTGGAGAAGGCCTTGTCCAAAGAATGCCAAGCCAAGGGAACAGGTTCCTTGCACCAAACAACAGGTTCAGCAAGGAGGTAACAAAGCATGAGGATGCACCAGAGAGTGAGTGGATGGGTTGGAATTGGAGATCAGAGGGTGACTTGTTCCTGAATGGAGCATTCTTCAAGCAATCTGGTGCTGGTGCTTCCTCTATCTATGCAAGGGCCTCAAGTCTTAGTGCAAGACCAGCTTCTCTTGTTGGATCCATGACCATCACTTCTGGTGTACTTAACTGCAGGAAGGGAAACCGTTGCTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00091	22500	24870	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	PL1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01728	pel	EC:4.2.2.2	Pentose and glucuronate interconversions	map00040
K01728	pel	EC:4.2.2.2	Quorum sensing	map02024

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000091s00010511.1	PF00544.14	Pec_lyase_C	134	297	5.30E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.809
SRR1783600	control	20.490
SRR1783602	moderate drought stress	19.278
SRR1811619	moderate drought stress	18.596

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	230.772
DRR006520	Root Summer glycyrrhizin high producing strain	231.169
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	24.699
DRR006524	Root Summer glycyrrhizin low producing strain	24.160
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.555
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.525

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	159.672
SRR2868004	Drought Stress(Tissue:root)	107.476
SRR2967015	Control (Tissue:root)	127.156

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.268
SRR9715740	Leave	0.000
SRR9715741	Leave	0.148
SRR9715739	Root	29.404
SRR9715742	Root	7.903
SRR9715743	Root	10.975

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.593
SRR8749028	MeJA induced 9h	0.113
SRR8749029	MeJA induced 9h	0.261
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	100.441
SRR8400027	Control-Root	203.799