Gene detail

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Gene detail information of Glyur000091s00010529.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13440.1	8.00E-163	glyceraldehyde-3-phosphate dehydrogenase C2
NR	XP_003524483.1	0	PREDICTED: glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like [Glycine max]
COG	YP_004042509.1	1.00E-167	glyceraldehyde-3-phosphate dehydrogenase [Paludibacter propionicigenes WB4]
Swissprot	tr\|Q7FAH2\|G3PC2_ORYSJ	0	Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
trEMBL	tr\|I1K135\|I1K135_SOYBN	0	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256\|RuleBase:RU361160}

Sequence

Transcript Sequence

>Glyur000091s00010529.1
ATGGGTCAGAAGATCAAGATTGGCATCAATGGATTTGGAAGGATTGGCCGTTTGGTGGCCAGGGTGGCATTGCAAAGAGATGACGTGGAGCTTGTTGCTGTTAATGATCCTTTCATTACAACTGATTATATGACGTACATGTTCAAGTATGATACTGTTCACGGGCATTGGAAAAACCATGAAATTAAGGTCAAGGACAACAAAACCCTTCTCTTTGGNGAAAGTCCTGTTGCTGTTTTTGGTATGAGGAACCCAGAGGAAATTCCATGGGGTGAGGCTGGAGCTGAATATGTTGTTGAGTCCACTGGAGTTTTCACTGATAAAGACAAGGCAGCTGCCCACTTGAAGGGTGGTGCAAAGAAGGTGATTATTTCTGCCCCAAGCAAGGATGCCCCAATGTTTGTTGTTGGTGTNAATGAGAAAGAGTANAAGCCAGATATTGATATTGTTTCNAATGCTAGCTGCACAACCAATTGTCTTGCTCCACTTGCAAAGGTTATTCACGACAAATTTGGAATTATTGAAGGTCTCATGAGCACAGTTCACTCAATTACTGCCACTCAAAAGACAGTTGATGGACCATCAATGAAGGATTGGAGAGGTGGTAGAGCTGCTTCTGTTAACATCATTCCAAGTAGTACTGGAGCTGCTAAGGCTGTTGGTAAGGTGTTGCCAGCACTGAACAACAAGTTGACAGGAATGTCTTTCNGAGTTCCCACTGTAGATGTTTCAGTTGTTGATCTTACTGTTAGAATTGAGAAGGGAGCTAGTTATGATGAAATTAAAGCTGCTTTGAAGGAGGCATCTGAGGGAAGTTTGAAGGGGATCCTTGGTTACATAGAGGATGATGTTGTGTCCACTGATTTTGTGGGTGACTGCAGGTCAAGCATTTTTGATGCAAAGGCTGGAATTTCTTTGAACAACAATTTTGTGAAACTTGTCTCTTGGTATGACAATGAATGGGGCTATAGCTCACGTGTGGTTGACTTGATCCGGCACATGGCCTCAGTGAAATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00091	143911	149219	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00134	GAPDH, gapA	EC:1.2.1.12	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Glycolysis / Gluconeogenesis	map00010
			Carbon fixation in photosynthetic organisms	map00710
			HIF-1 signaling pathway	map04066
			Alzheimer's disease	map05010

Gene Ontology

biological_process

GO:0006006 glucose metabolic process

GO:0055114 oxidation-reduction process

molecular_function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0050661 NADP binding GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000091s00010529.1	PF00044.19	Gp_dh_N	5	155	3.10E-55
Glyur000091s00010529.1	PF02800.15	Gp_dh_C	160	317	2.60E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.322
SRR1783600	control	0.351
SRR1783602	moderate drought stress	1.066
SRR1811619	moderate drought stress	0.909

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.000
SRR2868004	Drought Stress(Tissue:root)	0.022
SRR2967015	Control (Tissue:root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.058
SRR9715740	Leave	0.000
SRR9715741	Leave	0.064
SRR9715739	Root	0.000
SRR9715742	Root	0.280
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.002
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.063
SRR8400027	Control-Root	0.000