Gene detail information of Glyur000091s00010551.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G24090.12.00E-73chitinase A
NRKHN09877.14.33E-152Basic endochitinase [Glycine soja]
Swissprottr|P29061|CHIB_TOBAC3.00E-117Basic endochitinase (Precursor)
trEMBLtr|I1N7F0|I1N7F0_SOYBN2.00E-150Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G22510.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00091294180295082+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH18


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01183E3.2.1.14 EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000091s00010551.1PF00704.23Glyco_hydro_18302499.50E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.608
SRR1783600control7.764
SRR1783602moderate drought stress0.798
SRR1811619moderate drought stress0.772

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.035
DRR006520Root Summer glycyrrhizin high producing strain4.859
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain4.776
DRR006524Root Summer glycyrrhizin low producing strain4.778
DRR006525Leaf Summer glycyrrhizin high producing strain232.835
DRR006526Leaf Summer glycyrrhizin high producing strain232.306

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.871
SRR2868004Drought Stress(Tissue:root)4.152
SRR2967015Control (Tissue:root)2.859

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave84.240
SRR9715740Leave38.664
SRR9715741Leave54.959
SRR9715739Root28.886
SRR9715742Root29.474
SRR9715743Root27.293

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.067
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.035
SRR8749031Uninduced0.042
SRR8749032Uninduced0.032

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.768
SRR8400027Control-Root33.570

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved