Gene detail information of Glyur000091s00010553.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24090.1 | 3.00E-73 | chitinase A |
| NR | KHN09877.1 | 4.78E-152 | Basic endochitinase [Glycine soja] |
| Swissprot | tr|P29061|CHIB_TOBAC | 1.00E-117 | Basic endochitinase (Precursor) |
| trEMBL | tr|I1N7F0|I1N7F0_SOYBN | 3.00E-150 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G22510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00091 | 302448 | 303350 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01183 | E3.2.1.14 | EC:3.2.1.14 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000091s00010553.1 | PF00704.23 | Glyco_hydro_18 | 30 | 249 | 4.60E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.037 |
| SRR1783600 | control | 6.276 |
| SRR1783602 | moderate drought stress | 0.566 |
| SRR1811619 | moderate drought stress | 0.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.371 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.674 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.001 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.471 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.534 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 156.328 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 153.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.422 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.759 |
| SRR2967015 | Control (Tissue:root) | 2.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 35.389 |
| SRR9715740 | Leave | 17.463 |
| SRR9715741 | Leave | 22.743 |
| SRR9715739 | Root | 19.154 |
| SRR9715742 | Root | 17.054 |
| SRR9715743 | Root | 13.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.100 |
| SRR8749029 | MeJA induced 9h | 0.003 |
| SRR8749030 | Uninduced | 0.035 |
| SRR8749031 | Uninduced | 0.042 |
| SRR8749032 | Uninduced | 0.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.720 |
| SRR8400027 | Control-Root | 13.455 |