Gene detail

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Gene detail information of Glyur000092s00007483.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37000.1	5.00E-80	accelerated cell death 2 (ACD2)
NR	XP_004490558.1	1.27E-169	PREDICTED: red chlorophyll catabolite reductase, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q8LDU4\|RCCR_ARATH	4.00E-97	Red chlorophyll catabolite reductase, chloroplastic (Precursor)
trEMBL	tr\|G7KEI7\|G7KEI7_MEDTR	2.00E-169	Red chlorophyll catabolite reductase, putative {ECO:0000313\|EMBL:AET00808.2}

Sequence

Transcript Sequence

>Glyur000092s00007483.1
ATGGGGGTGATGATCTGTTGCCATTTCCTACAATCACCACTCTCCATCTTATCTTCTTCCTTTCCTTCATCTTCAAAGCATCATTTTCCAATACCTTTATCTTATTCTTCTTCAAGGCTTCAACTTTCTGCTTCTCGTTGTTCTGTCTCTTGCTGTCTGATGGACACCCCCAATCACCAAGGCCGCAGCAAATTCTTGGAGTTTCCCTTCGTTTCAGCTCCACAAAAGAACCTCATGGTTGATCTTGTTTCAACACTAGAGGATCGTTTTGGCTCCCACCTTCTTCCTTGCTCACTTTCCCCTGATGTTCAACACTACCAGAACCAGAGTGGTACTTCCCAAGTTTCACTGCATATTAGACCAGGCCATGCTGACTCCCCTGTAACTTCCCTTCCTTCTGCTTTATGCTCTCAAAATCCCTTTTTCCCAATAGATTTTGTACTGGGAAGCTGGGTGCATTCTGAGCTACCAACAGGAGGATCCTTAGACATAACATCTCTTGCAGCCTATCTCAACACTTCAAATGATGCACCAAATTTTGTGTTTGAGCTGATCCGAAGTAGTCCAACAATGCTAATCCTCGTTCTTGATTTGCCTCCTCGGAAAGACCTTGTTCTTTGGCCAGATTACCTCAAAACTTTCTATGAGGACACAAAACTTGATTCACATAGGCAAGCATTGGAGAGAGTTCCAGAGGTTCAACCTTATTTCTCTCCCTCACTTTTCATCCGCACTGTTTCCTCTCCCACAGCTATACTAGTTCGAATTCAGACAGAAAATGATGGGGGAGAGAGGTTGGAGGAGATCATTAGGAACCATTTGGACCCCATTTCAAAGCAAGTGTTTGGGATCTGGTTGGATCATTGTGCTTGTGCTAAGAGAGAAGTGGGGGAGGCAGAAAGAGCTTATCTGAAGAAAAGGGATGGTGTCATTAGAAACAAGACTGTTGAGGTTGATTTGAGTTCAAGCTTTCCAAGGTTGTTTGGTCAAGAAGCAGCAAACAGAATAGTGGAAGCCATCAAGGAGTATTTTACTGTCTGAGATGCAAAATTTATTTTGGAAAAAATGTTGGATTACTCTATGGAATTGTTGAGTCTCTAGTCAAGTATATCTTAAGCTGTAAATGATAGTTTGTTGTTCCCTATCAGTATGGTGTGCTTCTGTGACCCTGCTTGTAAATGATACTCTATGGATTACCATGCTGAACTAGAAGGAAAATTTCTTGAGTGTGACGTATTTGAGCTTAGACTGAAATACAAAATTCAAGACACAAGGTTTTTTTTTTTTTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	37674	39706	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13545	RCCR, ACD2	EC:1.3.7.12	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007483.1	PF06405.6	RCC_reductase	75	344	1.50E-110

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.051
SRR1783600	control	16.916
SRR1783602	moderate drought stress	26.734
SRR1811619	moderate drought stress	26.689

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.959
DRR006520	Root Summer glycyrrhizin high producing strain	22.532
DRR006521	Root Winter glycyrrhizin high producing strain	13.140
DRR006522	Root Winter glycyrrhizin high producing strain	12.785
DRR006523	Root Summer glycyrrhizin low producing strain	14.531
DRR006524	Root Summer glycyrrhizin low producing strain	14.730
DRR006525	Leaf Summer glycyrrhizin high producing strain	44.113
DRR006526	Leaf Summer glycyrrhizin high producing strain	44.019

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	7.892
SRR2868004	Drought Stress(Tissue:root)	11.871
SRR2967015	Control (Tissue:root)	14.380

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	20.697
SRR9715740	Leave	30.782
SRR9715741	Leave	20.338
SRR9715739	Root	4.534
SRR9715742	Root	9.643
SRR9715743	Root	7.548

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.823
SRR8749028	MeJA induced 9h	10.206
SRR8749029	MeJA induced 9h	6.538
SRR8749030	Uninduced	4.040
SRR8749031	Uninduced	4.217
SRR8749032	Uninduced	4.662

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	12.226
SRR8400027	Control-Root	12.800