Gene detail information of Glyur000092s00007487.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63010.1 | 2.00E-118 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_003533811.1 | 0 | PREDICTED: diphthamide biosynthesis protein 7 homolog isoformX1 [Glycine max] |
| Swissprot | tr|P43254|COP1_ARATH | 4.00E-08 | E3 ubiquitin-protein ligase COP1 |
| trEMBL | tr|K7LCE6|K7LCE6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G09140.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00092 | 56108 | 59257 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.985 |
| SRR1783600 | control | 0.892 |
| SRR1783602 | moderate drought stress | 1.001 |
| SRR1811619 | moderate drought stress | 0.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.168 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.294 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.003 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.982 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.902 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.833 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.166 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.701 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.793 |
| SRR2967015 | Control (Tissue:root) | 1.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.093 |
| SRR9715740 | Leave | 4.473 |
| SRR9715741 | Leave | 4.548 |
| SRR9715739 | Root | 0.868 |
| SRR9715742 | Root | 1.556 |
| SRR9715743 | Root | 1.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.553 |
| SRR8749028 | MeJA induced 9h | 3.958 |
| SRR8749029 | MeJA induced 9h | 5.340 |
| SRR8749030 | Uninduced | 1.603 |
| SRR8749031 | Uninduced | 0.909 |
| SRR8749032 | Uninduced | 0.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.692 |
| SRR8400027 | Control-Root | 2.377 |