Gene detail information of Glyur000092s00007502.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47640.1 | 2.00E-52 | nuclear factor Y, subunit B2 |
| NR | AFK41105.1 | 1.22E-98 | unknown [Medicago truncatula] |
| Swissprot | tr|O23310|NFYB3_ARATH | 3.00E-72 | Nuclear transcription factor Y subunit B-3 |
| trEMBL | tr|G7K4Q5|G7K4Q5_MEDTR | 5.00E-99 | Uncharacterized protein {ECO:0000313|EMBL:AFK41105.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00092 | 114743 | 115348 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000092s00007502.1 | PF00808.18 | CBFD_NFYB_HMF | 27 | 91 | 6.00E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.652 |
| SRR1783600 | control | 44.259 |
| SRR1783602 | moderate drought stress | 65.006 |
| SRR1811619 | moderate drought stress | 70.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 73.003 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 75.994 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.334 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.992 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 67.931 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 72.151 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 65.993 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 66.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.251 |
| SRR2868004 | Drought Stress(Tissue:root) | 47.206 |
| SRR2967015 | Control (Tissue:root) | 57.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 49.718 |
| SRR9715740 | Leave | 54.527 |
| SRR9715741 | Leave | 41.577 |
| SRR9715739 | Root | 106.229 |
| SRR9715742 | Root | 41.087 |
| SRR9715743 | Root | 52.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.033 |
| SRR8749028 | MeJA induced 9h | 17.456 |
| SRR8749029 | MeJA induced 9h | 30.374 |
| SRR8749030 | Uninduced | 27.028 |
| SRR8749031 | Uninduced | 10.378 |
| SRR8749032 | Uninduced | 14.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 50.054 |
| SRR8400027 | Control-Root | 47.953 |