Gene detail information of Glyur000092s00007507.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G55880.1 | 4.00E-175 | Pyridoxal-5'-phosphate-dependent enzyme family protein |
NR | XP_004491509.1 | 0 | PREDICTED: cysteine synthase 2-like [Cicer arietinum] |
COG | YP_007102480.1 | 3.00E-107 | cysteine synthase [Pseudanabaena sp. PCC 7367] |
Swissprot | tr|P38076|CYSK_WHEAT | 6.00E-31 | Cysteine synthase |
trEMBL | tr|G7K4P9|G7K4P9_MEDTR | 0 | Pyridoxal-5'-phosphate-dependent enzyme family protein {ECO:0000313|EMBL:AET00765.2} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00092 | 134842 | 138114 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K01738 | cysK | EC:2.5.1.47 | Carbon metabolism | map01200 |
Biosynthesis of amino acids | map01230 | |||
Sulfur metabolism | map00920 | |||
Cysteine and methionine metabolism | map00270 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000092s00007507.1 | PF00291.20 | PALP | 47 | 379 | 6.70E-48 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 5.204 |
SRR1783600 | control | 5.301 |
SRR1783602 | moderate drought stress | 5.397 |
SRR1811619 | moderate drought stress | 5.309 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 9.601 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 9.516 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 17.491 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 17.136 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 15.450 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 16.382 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.210 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.278 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 26.093 |
SRR2868004 | Drought Stress(Tissue:root) | 21.143 |
SRR2967015 | Control (Tissue:root) | 21.748 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 10.990 |
SRR9715740 | Leave | 11.923 |
SRR9715741 | Leave | 13.545 |
SRR9715739 | Root | 3.780 |
SRR9715742 | Root | 8.796 |
SRR9715743 | Root | 7.258 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 15.456 |
SRR8749028 | MeJA induced 9h | 8.151 |
SRR8749029 | MeJA induced 9h | 9.621 |
SRR8749030 | Uninduced | 10.808 |
SRR8749031 | Uninduced | 10.455 |
SRR8749032 | Uninduced | 9.209 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 19.157 |
SRR8400027 | Control-Root | 16.896 |