Gene detail

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Gene detail information of Glyur000092s00007513.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55590.1	2.00E-118	Pectin lyase-like superfamily protein
NR	XP_004491500.1	0	PREDICTED: pectinesterase QRT1-like [Cicer arietinum]
COG	YP_004641919.1	1.00E-56	pectinesterase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q9FM79\|PME62_ARATH	3.00E-146	Pectinesterase QRT1 (Precursor)
trEMBL	tr\|I1JJI8\|I1JJI8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G46890.1}

Sequence

Transcript Sequence

>Glyur000092s00007513.1
ATGATGATGGGGTTGTTGTTTTCTTCTAGAGCTCTAGTAGTCTTGTTTGTTTTGGTGTGGGTTCAGGTGCATTTGGCCAAAGGTGGCAATGTTGGTGTTAGCAATTTCATTAGTTGGGAAGATTTGGAGGTGGANGAACAAAGGTTGGCCTTGAAGTCGAATAGCGAGGTTCGAGTTATTGTGGTTGATCAGAATGGAAGTGGACATTCCAAAACTGTTCAAGGAGCAGTGGATATGGTTTCAGATCACAACACACAAAGGGTCAAAATTTACATTCATCCAGGAATTTACAGAGAAAGAGTGTTTGTGCCAAACACAAAGCCTTATATATCATTTATAGGCAAAAGAAATGAAACATCAAGTGCTGTTATTACTTGGAACAGTAAGTCATCTGATAGAGGTCCAAATGGCCAAGAATTGGGCACATATGGTTCAGCAACTGTTGCAGTAGAATCAGATTATTTCTGTGCAACTGGGGTCACTTTTGAGAACACAGTGGTGGCAACAGCTGGTGGANAAGGCATGCAAGCAGTGGCATTGAGGGTAGACAGTAATAGAGCCATGTTCTATAGAGTTAAGATTAAGGGAACACAGGACACTCTTNTGGACAACACAGGAAACCACTACTTCTATAGGTGTCTCATCCAAGGAAAAGTTGATTTTATCTTTGGCAGTGCAAAATCACTCTATGAGAAGTGTCGTCTTCAGTCAATAGCTGAGAACTATGGAGCAATTGCAGCACATCATAGGGATTCACCACAAGAAGATACAGGTTTTTCCTTTGTAGGGTGCAGCATTAGAGGAACTGGCAGTGTGTTCCTTGGGAGAGCATGGGGGGACTACTCAAGAGTAATATACTCAAATTGTAATATGGATGATATTATTCATCCACAAGGGTGGTCAGAATGGAACCATCCAGAAAGAGAGAAGACTGCAGTGTTTGGTGAGTATGAGTGCAAAGGAAGAGGAGCAGATAGAAGGGGTAGGGTGCCTTGGTCAAAATCGTTCAGCTATGGGGAAGCAAGGCCTTTCCTGGACATGAGCTTCATAAATGGAGACCAGTGGCTCAGACTATAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	162842	164427	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component GO:0005618 cell wall molecular_function GO:0030599 pectinesterase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007513.1	PF01095.14	Pectinesterase	60	352	9.70E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.811
SRR1783600	control	5.139
SRR1783602	moderate drought stress	3.610
SRR1811619	moderate drought stress	3.563

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.322
DRR006524	Root Summer glycyrrhizin low producing strain	0.410
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.949
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.945

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	21.267
SRR2868004	Drought Stress(Tissue:root)	11.779
SRR2967015	Control (Tissue:root)	10.214

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.348
SRR9715740	Leave	0.000
SRR9715741	Leave	0.208
SRR9715739	Root	1.074
SRR9715742	Root	1.277
SRR9715743	Root	0.921

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.132
SRR8749028	MeJA induced 9h	0.249
SRR8749029	MeJA induced 9h	0.379
SRR8749030	Uninduced	0.151
SRR8749031	Uninduced	0.377
SRR8749032	Uninduced	0.053

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	31.104
SRR8400027	Control-Root	35.355